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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20054
         (677 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0477 + 3431509-3431551,3432243-3432319,3432417-3432542,343...    30   1.5  
11_01_0167 - 1360166-1360369,1360747-1360823,1360911-1361534,136...    28   6.0  

>02_01_0477 +
           3431509-3431551,3432243-3432319,3432417-3432542,
           3432638-3432715,3432797-3432952,3433044-3433140,
           3433595-3433817,3440445-3440760,3440895-3441390,
           3441485-3441651
          Length = 592

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 445 NTPYKIPCKNCTGIYCSNSHIPYTIATLL 531
           N P+KI  ++C  +YC N   P+  +T L
Sbjct: 260 NGPWKISRQSCIPVYCKNDFFPFIQSTTL 288


>11_01_0167 -
           1360166-1360369,1360747-1360823,1360911-1361534,
           1361621-1361825
          Length = 369

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 41  IEKGVVDAITHEARYSLSEEK 103
           I KG++D ITH ARY   E +
Sbjct: 262 IYKGIMDIITHPARYGFDETR 282


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,454,103
Number of Sequences: 37544
Number of extensions: 282571
Number of successful extensions: 624
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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