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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20053
         (739 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0476 - 16363811-16364101,16364515-16364763,16365008-163651...    29   5.1  

>04_03_0476 -
           16363811-16364101,16364515-16364763,16365008-16365143,
           16365552-16365770,16366210-16366588,16366909-16367089
          Length = 484

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -3

Query: 329 YTLKFYTKILILYSFDEFSMAAFDFARTRKTYTSMDKQ 216
           Y  KFY K+LI  +F+EF     D  + + TYT  + Q
Sbjct: 272 YLKKFYIKLLI--NFEEFEHQVSDNEKYKVTYTKQEFQ 307


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,614,598
Number of Sequences: 37544
Number of extensions: 247187
Number of successful extensions: 526
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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