Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00047
         (550 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17...   114   4e-26
09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044    113   1e-25
10_06_0185 + 11592108-11592265,11592585-11592685,11593917-115939...    27   7.5  
03_06_0712 - 35683814-35684065,35685296-35685466                       27   7.5  
07_03_1082 - 23834840-23835928,23836879-23836974,23837739-23837930     27   9.9  

>02_01_0029 -
           176002-176137,176495-176646,177166-177577,178010-178126,
           178260-178322,178964-179167,180605-180687,182394-182516,
           182987-183328
          Length = 543

 Score =  114 bits (275), Expect = 4e-26
 Identities = 51/90 (56%), Positives = 71/90 (78%), Gaps = 3/90 (3%)
 Frame = +2

Query: 2   LTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP---RLLKVEKWFGSKKELAAVRTVC 172
           +TVHV +++VTV+GPRG L RNFKHL +D +++     R L+V+ WFG+++ +AA+RT  
Sbjct: 7   VTVHVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMAAIRTAI 66

Query: 173 SHVENMIKGVTKGFQYKMRAVYAHFPITVS 262
           SHV+N+I GVTKG++YKMR VYAHFPI  S
Sbjct: 67  SHVQNLITGVTKGYRYKMRFVYAHFPINAS 96



 Score =  109 bits (263), Expect = 1e-24
 Identities = 52/82 (63%), Positives = 64/82 (78%)
 Frame = +1

Query: 265 TEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQST 444
           T  N+ IEIRNFLGEK +R+V M  GVT++ S K KDEL+++GN +E VS SAALI Q  
Sbjct: 98  TNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKC 157

Query: 445 TVKNKDIRKFLDGLYVSEKTTV 510
            VKNKDIRKFLDG+YVS+K T+
Sbjct: 158 HVKNKDIRKFLDGIYVSDKGTI 179


>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
          Length = 190

 Score =  113 bits (271), Expect = 1e-25
 Identities = 50/88 (56%), Positives = 70/88 (79%), Gaps = 1/88 (1%)
 Frame = +2

Query: 2   LTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-RLLKVEKWFGSKKELAAVRTVCSH 178
           +TV V +++VTV+GPRG L RNFKHL +D +++   R L+V+ WFG+++ +AA+RT  SH
Sbjct: 16  VTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWFGTRRTMAAIRTAISH 75

Query: 179 VENMIKGVTKGFQYKMRAVYAHFPITVS 262
           V+N+I GVTKG++YKMR VYAHFPI  S
Sbjct: 76  VQNLITGVTKGYRYKMRFVYAHFPINAS 103



 Score =  109 bits (263), Expect = 1e-24
 Identities = 52/82 (63%), Positives = 64/82 (78%)
 Frame = +1

Query: 265 TEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQST 444
           T  N+ IEIRNFLGEK +R+V M  GVT++ S K KDEL+++GN +E VS SAALI Q  
Sbjct: 105 TNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKC 164

Query: 445 TVKNKDIRKFLDGLYVSEKTTV 510
            VKNKDIRKFLDG+YVS+K T+
Sbjct: 165 HVKNKDIRKFLDGIYVSDKGTI 186


>10_06_0185 +
           11592108-11592265,11592585-11592685,11593917-11593979,
           11594407-11594426
          Length = 113

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 400 LEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVC 513
           +E  S++   I    TV NK+  K L G  +SEK   C
Sbjct: 65  MESTSTTVPSIVVYVTVPNKEAGKRLAGSIISEKLAAC 102


>03_06_0712 - 35683814-35684065,35685296-35685466
          Length = 140

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +2

Query: 53  VLKRNF-KHLAVDIRMVNPRLLKVE 124
           VLKR+F +  AVD+R +NP++ K E
Sbjct: 5   VLKRHFSRKRAVDVRRINPKVPKEE 29


>07_03_1082 - 23834840-23835928,23836879-23836974,23837739-23837930
          Length = 458

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +2

Query: 17  KSRLVTVKGPRGVLKRNFKH-LAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMI 193
           K  ++   GP G +K   K+   +    +NPRL K+ +    KKEL  V    S+V  M+
Sbjct: 143 KDEVLYKAGPFGTVKAIRKNPTVIPDESINPRLAKILQQVAIKKEL-IVALANSNVREML 201

Query: 194 K 196
           +
Sbjct: 202 E 202


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,787,528
Number of Sequences: 37544
Number of extensions: 295200
Number of successful extensions: 638
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)