Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00038
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0107 - 12613491-12613538,12613906-12614139,12614682-126147...    30   1.7  
07_03_1736 + 29130118-29130294,29130649-29130703,29130837-291310...    29   3.0  
06_03_0445 - 20866417-20866442,20868280-20868478,20868576-208687...    29   3.9  
11_06_0613 - 25509044-25509118,25509256-25511275,25511632-25512467     28   9.1  

>01_03_0107 -
           12613491-12613538,12613906-12614139,12614682-12614713,
           12616021-12616176,12617972-12618159,12618242-12618324,
           12618821-12618976,12620320-12621162,12621197-12621550,
           12621962-12623125
          Length = 1085

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -1

Query: 188 HYFTCLNPIARSRPAILGSYVTSPLH*PPTKNLPGSSSRSNGDNI-DEYRLYAVEDNENT 12
           HY T  +P  R+R  +  S+  + +  PP + +     R NG+ + D Y L+ ++ +   
Sbjct: 485 HYVTMPDPPFRTRYIVGSSHGAAQITMPPPETIANVRIRCNGEGVPDGYDLFTMDMSSRD 544

Query: 11  LD 6
            D
Sbjct: 545 FD 546


>07_03_1736 +
           29130118-29130294,29130649-29130703,29130837-29131048,
           29131201-29131322,29131406-29131559,29131849-29131918,
           29132007-29132152,29132238-29132310,29132366-29132418,
           29132514-29132658,29132945-29133063,29133171-29133242,
           29133336-29133439,29133695-29133751,29133861-29134059,
           29134169-29134312,29134418-29134537
          Length = 673

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 654 N*DYFLYFGNQRLWLVVYGNNYSSIYSHI 568
           N DY +  GNQ  W++ Y  NY   YS I
Sbjct: 385 NLDY-VSIGNQECWMLYYRGNYQKFYSAI 412


>06_03_0445 -
           20866417-20866442,20868280-20868478,20868576-20868731,
           20869207-20870097
          Length = 423

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 10/18 (55%), Positives = 16/18 (88%), Gaps = 1/18 (5%)
 Frame = +3

Query: 252 VVRDCII-QRWRYQWRTV 302
           VVR C++ +RWR+QW++V
Sbjct: 43  VVRTCVLSRRWRHQWKSV 60


>11_06_0613 - 25509044-25509118,25509256-25511275,25511632-25512467
          Length = 976

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 282 RYQWRTVFGSVGLGTFNEPEF*ELVKM 362
           R QW  VF S+G G   EP+  ++ K+
Sbjct: 392 RDQWHDVFNSIGRGLTEEPKVEDMTKI 418


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,263,091
Number of Sequences: 37544
Number of extensions: 355555
Number of successful extensions: 742
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)