Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00034
(681 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1419 - 26428539-26428778,26429512-26429659,26429896-264300... 62 5e-10
03_03_0089 + 14359650-14359889,14360859-14361120,14361633-143618... 56 3e-08
10_07_0024 - 11964126-11964542,11965235-11966176,11966245-119662... 31 1.1
01_06_1637 - 38805609-38805719,38805872-38806017,38806115-388062... 28 1.5
10_08_0683 - 19860777-19861070,19861677-19861874,19862498-198626... 30 2.0
07_01_0783 + 6068229-6068503,6069159-6069269,6069806-6070150,607... 29 4.5
06_03_0884 + 25651238-25652164,25653851-25654504 28 7.9
01_05_0203 - 19241442-19241710,19241845-19242055,19242602-192431... 28 7.9
>07_03_1419 -
26428539-26428778,26429512-26429659,26429896-26430076,
26430285-26430546,26430946-26430975,26431355-26431591
Length = 365
Score = 61.7 bits (143), Expect = 5e-10
Identities = 33/85 (38%), Positives = 53/85 (62%), Gaps = 3/85 (3%)
Frame = +3
Query: 264 AYENARFLCDRYYLASPELEVLQDGVSSLRPMPIVYVPSHLYHMLFELFKNAMRAVME-- 437
A E+AR +C R Y ++PE+++ D + YV SHL+ MLFEL KN++RAV E
Sbjct: 208 ASEDARSICLREYGSAPEIDIYGDPTFTFP-----YVSSHLHLMLFELVKNSLRAVQERY 262
Query: 438 -NHGTAPPPIQVNLVNGKEDISVKI 509
N PP+++ + +G ED+++K+
Sbjct: 263 MNSDKDVPPVRIIVADGAEDVTIKV 287
Score = 44.4 bits (100), Expect = 8e-05
Identities = 21/35 (60%), Positives = 24/35 (68%)
Frame = +1
Query: 49 SRRDPGTENSIQYFLDRFYMSRISIRMLINQHTLL 153
+R+ P + I FLDRFYMSRI IRMLI QH L
Sbjct: 148 TRKIPTAFDEIHEFLDRFYMSRIGIRMLIGQHVAL 182
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/31 (58%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +1
Query: 553 FKYMYSTAPQPSKSD--SHTVPLAGYGYGLP 639
F Y+YSTA P D S V +AGYGYGLP
Sbjct: 303 FTYLYSTAKNPPDMDCPSEGVTMAGYGYGLP 333
Score = 31.1 bits (67), Expect = 0.84
Identities = 22/59 (37%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Frame = +2
Query: 509 SDRGGGIPRSVGASVXXXXXXXXXXXXXXXXXXXXXXVTDTG--CLISRLYARYFHGDL 679
SD GGGIPRS + + G ISRLYARYF GDL
Sbjct: 288 SDEGGGIPRSGLPRIFTYLYSTAKNPPDMDCPSEGVTMAGYGYGLPISRLYARYFGGDL 346
>03_03_0089 +
14359650-14359889,14360859-14361120,14361633-14361813,
14362141-14362288,14362836-14363040,14363304-14363362
Length = 364
Score = 55.6 bits (128), Expect = 3e-08
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Frame = +3
Query: 264 AYENARFLCDRYYLASPELEVLQDGVSSLRPMPIVYVPSHLYHMLFELFKNAMRAVME-- 437
A E+AR +C R Y ++P++ + D YV HL M+FEL KN++RAV E
Sbjct: 199 ATEDARAICMREYGSAPDVNIYGDP-----DFTFPYVKLHLQLMMFELVKNSLRAVQERY 253
Query: 438 -NHGTAPPPIQVNLVNGKEDISVKI 509
N PP+++ + +G ED+++KI
Sbjct: 254 MNSDKHAPPVRIIVADGAEDVTIKI 278
Score = 42.7 bits (96), Expect = 3e-04
Identities = 21/31 (67%), Positives = 22/31 (70%)
Frame = +1
Query: 61 PGTENSIQYFLDRFYMSRISIRMLINQHTLL 153
PG + I FLDRFYMSRI IRMLI QH L
Sbjct: 144 PGIDE-IHQFLDRFYMSRIGIRMLIGQHVAL 173
Score = 36.3 bits (80), Expect = 0.022
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +1
Query: 529 PAQCRSFCFKYMYSTAPQPSKSDSHT--VPLAGYGYGLP 639
P S F Y+YSTA P D V +AGYGYG+P
Sbjct: 286 PRSGLSRIFTYLYSTAENPPDLDGRNEGVTMAGYGYGIP 324
Score = 31.9 bits (69), Expect = 0.48
Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Frame = +2
Query: 509 SDRGGGIPRSVGASVXXXXXXXXXXXXXXXXXXXXXXVT--DTGCLISRLYARYFHGDL 679
SD GGGIPRS + + + G ISRLYARYF GDL
Sbjct: 279 SDEGGGIPRSGLSRIFTYLYSTAENPPDLDGRNEGVTMAGYGYGIPISRLYARYFGGDL 337
>10_07_0024 -
11964126-11964542,11965235-11966176,11966245-11966291,
11966545-11966602,11968378-11968624,11970207-11970390,
11970410-11970548,11970689-11970796
Length = 713
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Frame = +3
Query: 471 NLVNGKEDISVKILIAAAASRAVSE------LLFQVHVQHGAAALQVRLAHGAASGLRIR 632
N V +SV ILI A RA L ++HV HG+ + ++H +G I
Sbjct: 29 NAVEHLSQMSVGILIRLATERASLRHNDEVGLQVEIHVSHGSELAESLVSHSLEAGFSIS 88
Query: 633 AA*SRVCTRGIS 668
TRG++
Sbjct: 89 RVFYEAVTRGLT 100
>01_06_1637 -
38805609-38805719,38805872-38806017,38806115-38806220,
38806347-38806424,38806682-38806735,38806997-38807075,
38807136-38807260,38807441-38807530,38807635-38807714,
38807837-38807963,38808076-38808158,38808309-38808438
Length = 402
Score = 27.9 bits (59), Expect(2) = 1.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 277 QGSSATDTT*PHQSWRYCRTECRVCA 354
Q + A D + P QSW C+T+ R C+
Sbjct: 284 QNALAPDGSFPGQSWSSCKTDIRNCS 309
Score = 21.0 bits (42), Expect(2) = 1.5
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = +1
Query: 397 CLNYSRTP*EPSWRTTALP 453
C + +TP + SW + A P
Sbjct: 343 CFTHCQTPFDISWNSQASP 361
>10_08_0683 -
19860777-19861070,19861677-19861874,19862498-19862659,
19862763-19862911,19863089-19863236,19863317-19863385,
19863471-19863719,19863937-19864131,19864444-19864560,
19864978-19866537
Length = 1046
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +1
Query: 157 GEQLGGKQASVNGIGNGGRHIGSIDPACDVVAVLGTL 267
G Q GG Q G GG GS+ P+ VV + GTL
Sbjct: 207 GSQHGGMQMVAYGSPAGGSQHGSVRPSLKVVLLHGTL 243
>07_01_0783 +
6068229-6068503,6069159-6069269,6069806-6070150,
6071030-6071211,6071331-6071422,6071505-6071835,
6071960-6072170,6072551-6072665,6073677-6073838,
6073938-6074610,6074766-6074972,6075134-6076254
Length = 1274
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +3
Query: 312 PELEVLQDGVSSLRPMPIVYVPSHLYHMLFELFKNAMRAVMENHGTAPPPIQVNLVNGKE 491
P L V+ G+S P+ YVP +H L A+ A+ E G+ P + + G+E
Sbjct: 585 PMLNVIVTGIS-----PVDYVPIFSFHGLIPELAAALMAICEVFGSLSPSVSWSPRTGEE 639
>06_03_0884 + 25651238-25652164,25653851-25654504
Length = 526
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 516 AAAASRAVSELLFQVHVQHGAAALQVRL 599
AAAAS + ++L ++H GA LQV L
Sbjct: 272 AAAASEDILDVLLRIHKDGGAGGLQVPL 299
>01_05_0203 -
19241442-19241710,19241845-19242055,19242602-19243181,
19243204-19244189
Length = 681
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 659 ARTDARLGSPYP*PASGTVCESDLEGCGAVLYMYLK 552
AR+DA +P P P + T+ E LEG L Y +
Sbjct: 106 ARSDAAGDAPSPPPETRTIAERSLEGLITFLTSYFR 141
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,661,353
Number of Sequences: 37544
Number of extensions: 507075
Number of successful extensions: 1814
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1809
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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