Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00031
(485 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0411 - 17725661-17725842,17726066-17726104,17726379-177264... 58 4e-09
03_01_0067 - 538929-539143,539306-539344,539579-539635,539727-53... 58 4e-09
03_06_0698 + 35608666-35608709,35608810-35608958,35609493-356095... 48 5e-06
12_01_0667 + 5674322-5674393,5674455-5675159,5676051-5676087,567... 31 0.65
09_04_0512 + 18226981-18227143,18227648-18229555,18229649-182302... 29 1.5
02_05_0684 - 30880527-30880753,30881952-30882124,30882687-308827... 29 1.5
06_03_1365 + 29598130-29598523,29599016-29599078,29599292-29599398 29 2.6
05_07_0064 + 27440520-27440942,27442387-27442998,27443109-274431... 29 2.6
04_04_0666 + 27086568-27086975,27087073-27087477,27088542-270886... 29 2.6
08_01_0132 + 1055977-1056483,1058083-1058186,1058330-1058385,105... 28 4.6
05_05_0342 - 24231924-24232178,24232271-24232653,24232778-24232790 27 6.0
>10_08_0411 -
17725661-17725842,17726066-17726104,17726379-17726435,
17726524-17726672,17727195-17727262,17727796-17727798
Length = 165
Score = 58.0 bits (134), Expect = 4e-09
Identities = 27/44 (61%), Positives = 31/44 (70%)
Frame = +3
Query: 135 MNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDKKLQHRSK 266
MN +KLKK+ VR GGKG+ RRKKK VH T TDDK+LQ K
Sbjct: 2 MNVDKLKKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLK 45
Score = 53.6 bits (123), Expect = 8e-08
Identities = 21/46 (45%), Positives = 35/46 (76%)
Frame = +1
Query: 346 PEAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRIA 483
P+ QAS+ ANT+ ++G + K+ ++LP I++QLGPD L+ L+R+A
Sbjct: 72 PKVQASIGANTWVVSGTPQTKKLQDLLPSIINQLGPDNLDNLRRLA 117
Score = 45.6 bits (103), Expect = 2e-05
Identities = 21/37 (56%), Positives = 29/37 (78%)
Frame = +2
Query: 242 QKTAASLKKLSVNTIPGIEEVNMIKEDGTVIHFNNPK 352
++ ++LK++ VNTIPGIEEVN+ K+D VI F NPK
Sbjct: 38 KRLQSTLKRVGVNTIPGIEEVNIFKDD-VVIQFLNPK 73
>03_01_0067 -
538929-539143,539306-539344,539579-539635,539727-539875,
540298-540365,542009-542093,542185-542246,542612-542700,
543034-543088,544127-544252,544477-544576,544697-545499
Length = 615
Score = 58.0 bits (134), Expect = 4e-09
Identities = 27/44 (61%), Positives = 31/44 (70%)
Frame = +3
Query: 135 MNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDKKLQHRSK 266
MN +KLKK+ VR GGKG+ RRKKK VH T TDDK+LQ K
Sbjct: 441 MNVDKLKKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLK 484
Score = 52.8 bits (121), Expect = 1e-07
Identities = 21/46 (45%), Positives = 35/46 (76%)
Frame = +1
Query: 346 PEAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRIA 483
P+ QAS+ ANT+ ++G + K+ ++LP I++QLGPD L+ L+R+A
Sbjct: 511 PKVQASIGANTWVVSGTPQTKKLQDLLPTIINQLGPDNLDNLRRLA 556
Score = 44.8 bits (101), Expect = 4e-05
Identities = 20/37 (54%), Positives = 28/37 (75%)
Frame = +2
Query: 242 QKTAASLKKLSVNTIPGIEEVNMIKEDGTVIHFNNPK 352
++ ++LK++ VN IPGIEEVN+ K+D VI F NPK
Sbjct: 477 KRLQSTLKRVGVNNIPGIEEVNIFKDD-VVIQFQNPK 512
>03_06_0698 +
35608666-35608709,35608810-35608958,35609493-35609531,
35610024-35610163,35611130-35611244,35611281-35611399,
35611413-35611979
Length = 390
Score = 47.6 bits (108), Expect = 5e-06
Identities = 22/32 (68%), Positives = 23/32 (71%)
Frame = +3
Query: 171 VRIGGKGTPRRKKKVVHVTAATDDKKLQHRSK 266
VR GGKGT RRKKK VH T TDDK+LQ K
Sbjct: 5 VRTGGKGTVRRKKKAVHKTGTTDDKRLQSTLK 36
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/37 (54%), Positives = 28/37 (75%)
Frame = +2
Query: 242 QKTAASLKKLSVNTIPGIEEVNMIKEDGTVIHFNNPK 352
++ ++LK++ VNTIP IEEVN+ K+D VI F NPK
Sbjct: 29 KRLQSTLKRVGVNTIPAIEEVNIFKDD-LVIQFVNPK 64
Score = 37.9 bits (84), Expect = 0.004
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = +1
Query: 406 KQTTEMLPGILSQLGPDGLNRLKRIA 483
K+ ++LPGI++QLGPD + LKRIA
Sbjct: 64 KELQDVLPGIINQLGPDNMEHLKRIA 89
>12_01_0667 +
5674322-5674393,5674455-5675159,5676051-5676087,
5676238-5676335,5676452-5676475
Length = 311
Score = 30.7 bits (66), Expect = 0.65
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Frame = +3
Query: 72 NSVIKK-CPVLTLTQFTLKNSRMNSEKLKKLQS--QVRIGGKGTPRRKKKVVHVTAATDD 242
++V+++ C + + + LK E+LKKL + R GG G P R K +H+ +A+
Sbjct: 241 DAVVQRFCQEVGVKRRVLKYGSGAPEELKKLDFFWERRGGGGGNPLRNKMKIHLASASTS 300
Query: 243 KKLQ 254
+LQ
Sbjct: 301 IRLQ 304
>09_04_0512 + 18226981-18227143,18227648-18229555,18229649-18230295,
18230710-18231949,18232085-18232419,18232500-18232577,
18232872-18232978,18233020-18233062
Length = 1506
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +2
Query: 125 KQQNEQRKIKETPVASTHRR*GHTETQEEGCSRYCGH--R*QKTAASLKKLSVN 280
++Q EQ+K ++ VA+ R+ G E +E+ R C R Q+ + K L+VN
Sbjct: 1368 QKQEEQKKKRDADVAAKKRQRGEEERKEKQRKRKCTEEARKQQKQPTEKSLAVN 1421
>02_05_0684 - 30880527-30880753,30881952-30882124,30882687-30882754,
30882860-30882973,30883281-30883438,30883516-30883654,
30883851-30883907,30884064-30884140,30884324-30884462,
30884590-30884668,30885047-30885174,30885269-30885352,
30886072-30886191,30886274-30886375,30886470-30886617,
30887404-30887749,30887851-30887968,30888309-30888370,
30888798-30888947,30889049-30889169,30889269-30889319,
30889427-30889567
Length = 933
Score = 29.5 bits (63), Expect = 1.5
Identities = 21/90 (23%), Positives = 37/90 (41%)
Frame = +1
Query: 187 RAHRDARRRLFTLLRPQMTKNCSIAQKVVSEHNSWHRRGKYDQRGRYCDTL*QPEAQASL 366
+A D +L++ + Q N I + + +HN+ RR KY ++ L Q S+
Sbjct: 787 KAKEDMLNQLYSKISAQT--NAKIEELLQEDHNAKRRREKYQKQSSLLSKL---TRQLSI 841
Query: 367 AANTFAITGHGENKQTTEMLPGILSQLGPD 456
N ++ + + E P Q G D
Sbjct: 842 HDNRASVASYTNDSSGAESSPRTSGQSGED 871
>06_03_1365 + 29598130-29598523,29599016-29599078,29599292-29599398
Length = 187
Score = 28.7 bits (61), Expect = 2.6
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = -1
Query: 284 LCSLTTF*AMLQFFVICGRSNVNNLLLASRCALTSDA 174
LC++ T A LQ F G + LLLA RC +T+DA
Sbjct: 80 LCAILTNKAALQAF---GVAPEQGLLLAKRCGVTTDA 113
>05_07_0064 +
27440520-27440942,27442387-27442998,27443109-27443175,
27443271-27443362,27443493-27443708,27443869-27444006,
27444325-27444474
Length = 565
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 177 IGGKGTPRRKKKVVHVTAATDDKKLQHRSKSC 272
+G +G R+K+ VH T + DD KL + C
Sbjct: 314 MGTEGVEFRRKRFVHCTLSLDDVKLVKNAMKC 345
>04_04_0666 +
27086568-27086975,27087073-27087477,27088542-27088635,
27088731-27088768,27088853-27088999,27089167-27089266,
27090001-27090953,27091512-27091569,27092904-27093022
Length = 773
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 305 NMIKEDGTVIHFNNPKHKRRWPRTRSR 385
N++ E V+H P H WPRTRS+
Sbjct: 526 NIVSEPEEVLH-PQPHHSSFWPRTRSK 551
>08_01_0132 +
1055977-1056483,1058083-1058186,1058330-1058385,
1058534-1058688,1058842-1058955,1059207-1059449
Length = 392
Score = 27.9 bits (59), Expect = 4.6
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -3
Query: 210 SSCVSVCPYLRCVLATGVSLIFRCS 136
+SC +CPY+ A G+++IF C+
Sbjct: 133 TSC-PICPYVLLAAAVGITIIFLCT 156
>05_05_0342 - 24231924-24232178,24232271-24232653,24232778-24232790
Length = 216
Score = 27.5 bits (58), Expect = 6.0
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +3
Query: 69 LNSVIKKCPVLTLTQFTLKN--SRMNSEKLKKLQSQVRI-GGKGTPRRKKKVVHVTAATD 239
L + K V +LT ++K S M + +KL+++ GK P +KKK +HV A
Sbjct: 140 LMKAMNKLAVASLTSTSVKEIVSSMTTVANEKLKAEKAADAGKKKPGQKKKRLHVNKAEG 199
Query: 240 DK 245
K
Sbjct: 200 QK 201
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,989,001
Number of Sequences: 37544
Number of extensions: 255118
Number of successful extensions: 725
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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