Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00018
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0599 - 26516854-26517452,26517547-26517963,26518044-265183...    30   1.8  
02_01_0178 - 1223725-1223736,1223900-1224025,1224404-1224649,122...    27   3.7  
05_04_0175 - 18742156-18743592                                         28   5.6  
04_04_1700 - 35465563-35465625,35465748-35465875,35466018-354660...    28   5.6  
01_06_1258 + 35806557-35806932,35807517-35807679,35807789-358078...    28   7.4  

>04_04_0599 -
           26516854-26517452,26517547-26517963,26518044-26518394,
           26518651-26518748,26518875-26518945,26519638-26520318
          Length = 738

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = -3

Query: 458 IDSASTGHASSSFIALELLMSAFDITNDESRSASLRPSNFC*V--GEMATDAARLG 297
           +      HA  +  +++L +  FD TN+      L P+N C     E+A +A R G
Sbjct: 306 VQEEDINHALFNLFSVQLRLGFFDKTNENQWFTQLGPNNVCTTEHRELAAEAVRQG 361


>02_01_0178 -
           1223725-1223736,1223900-1224025,1224404-1224649,
           1224731-1224922,1225059-1225138,1225233-1226826
          Length = 749

 Score = 26.6 bits (56), Expect(2) = 3.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 152 IAVNGILFAIFIYDLSCKCPGYTSILHYVE 241
           +  + ILF + I+D+  KCP Y  I+ Y++
Sbjct: 548 VQTSRILFYLRIFDIKKKCP-YHKIVRYIQ 576



 Score = 20.6 bits (41), Expect(2) = 3.7
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 44  CLTSIIEMSLSPNSSLVRRTIDLNYEN 124
           CL  +  + L   +  VRR + +N EN
Sbjct: 487 CLEHLRRLRLPEYTEAVRRAVLVNQEN 513


>05_04_0175 - 18742156-18743592
          Length = 478

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -3

Query: 488 VSRACCMREDIDSASTGHASSSFIALELLMSAFDITNDESRSAS 357
           V+R   + ED+    TGH+  S +A   ++SA+DI    + SA+
Sbjct: 322 VTRYAALGEDVSVTVTGHSLGSALA---MISAYDIAESGAASAA 362


>04_04_1700 -
           35465563-35465625,35465748-35465875,35466018-35466096,
           35466818-35467624
          Length = 358

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +2

Query: 185 IYDLSCKCPGYTSILHYVELGLARYWLLTLSNTHCNCC 298
           + DL C C    ++ HY     A  W +T  +T C  C
Sbjct: 102 LMDLGCSCKNDLALAHY---ACALKWFITHGSTVCEIC 136


>01_06_1258 +
           35806557-35806932,35807517-35807679,35807789-35807837,
           35807943-35808866,35808954-35809049,35809142-35809257,
           35809345-35809447,35809570-35809658,35809750-35809900,
           35809995-35810141,35810238-35810366,35810451-35810529,
           35810616-35810725
          Length = 843

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 74  SPNSSLVRRTIDLNYENKKRANSLK-WIAVNGILFA 178
           SP    V RT+D  +EN KR   +  W+AVN  LFA
Sbjct: 273 SPLKRHVSRTVDFVHENWKRIWLVALWLAVNVGLFA 308


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,456,724
Number of Sequences: 37544
Number of extensions: 288299
Number of successful extensions: 619
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)