Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0280.Seq
         (766 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1010 + 8561656-8561764,8563666-8563919,8564309-8564331,856...    32   0.58 
11_06_0062 + 19709801-19710832,19712383-19712568,19712661-197128...    31   1.0  
04_04_1104 - 30928475-30928501,30929008-30929110,30929287-309293...    31   1.0  
01_05_0463 + 22461169-22461216,22463153-22463248,22463334-224634...    28   9.4  

>07_01_1010 +
           8561656-8561764,8563666-8563919,8564309-8564331,
           8564926-8564962,8565503-8565985
          Length = 301

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 70  KLRVIPNKMASSYFTESEAPRDFRVSSTESDGQYTKCH 183
           + R +P++M S   T + AP  FRV   E       CH
Sbjct: 198 RFRALPSRMGSRIVTAAGAPEPFRVDGVEDGCSRASCH 235


>11_06_0062 +
           19709801-19710832,19712383-19712568,19712661-19712867,
           19712940-19713078,19713172-19713380,19713520-19714134
          Length = 795

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 11/99 (11%)
 Frame = +3

Query: 282 KLSKLLRLKMNRKHILDRCERLLAPKLKKDSLLTEAKQCRDKID----LLKLAINQRR-- 443
           KL+K L+ K++R H L   E+L    L+K S L+     RD+ D     L++ + + R  
Sbjct: 688 KLNKALQFKLDRTHSLAYREKLKEQVLEKQSSLSRIGASRDENDSAMAKLEMELGRHRWD 747

Query: 444 -----SNVDXKXKELSELKTYNTELALRASKISEKGSKS 545
                  ++ +  ELS LK  ++  A  A + +EK  +S
Sbjct: 748 GQMMSKKMEDEEAELSRLKAEDSN-AQEACRDAEKQFRS 785


>04_04_1104 -
           30928475-30928501,30929008-30929110,30929287-30929340,
           30929803-30929895,30930063-30930140,30930416-30930527,
           30930618-30930756,30930823-30930910,30930984-30931079,
           30931675-30931781,30931874-30932009,30932089-30932186,
           30932954-30933047,30933132-30933301,30933749-30933819,
           30936066-30936194,30936552-30936654,30936764-30936907,
           30937123-30937245,30937482-30937563,30939044-30939120,
           30939261-30939315,30939365-30939443,30939544-30939620,
           30939739-30939869,30939947-30940120,30940245-30940310,
           30940937-30941572
          Length = 1113

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +1

Query: 112 TESEAPRDFRVSSTESDGQYTKCHLCYTVKRNFYCTDCIKEGNFVHSSCL 261
           ++  +P +    STESD ++  C +C T +       C      VH  CL
Sbjct: 620 SDDYSPSESDHGSTESDEEFHMCQICNTEEEKTLLLHCSGCSRHVHPGCL 669


>01_05_0463 +
           22461169-22461216,22463153-22463248,22463334-22463446,
           22463479-22463494,22463939-22464031,22464118-22464261,
           22464508-22464596,22464687-22464792,22464874-22464961,
           22465585-22465703,22465788-22465952,22466235-22466404,
           22466488-22466597,22466682-22466791,22466886-22466996,
           22467082-22467183,22467266-22467471,22467563-22467881,
           22467983-22468093
          Length = 771

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +1

Query: 619 RWAALRRSWLPPTGXLL 669
           RW  + RSWL PTG LL
Sbjct: 628 RWYHVPRSWLSPTGNLL 644


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,224,561
Number of Sequences: 37544
Number of extensions: 297209
Number of successful extensions: 699
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)