Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30299.Seq
         (835 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999...    29   6.0  
10_07_0081 - 12716130-12716271,12716367-12716449,12716729-127167...    28   8.0  
04_01_0449 + 5830017-5830272,5830376-5830620,5831994-5833019           28   8.0  

>12_02_0800 +
           23299674-23299678,23299714-23299791,23299876-23299920,
           23300052-23300415,23300493-23300574,23300793-23300873,
           23300974-23302106,23302202-23302350,23302426-23302516,
           23303628-23305940
          Length = 1446

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +2

Query: 263 NADLYGEEVTKDYQRSYEVFARRVLGAAPMPFDKYTFMPSAMDFYQTSLRDPAF 424
           N D Y       Y  +  V   R +   PM +D Y + P   +F   ++RDP F
Sbjct: 341 NGDAYLSVPPSSYMMNQPVIPVRPVYQGPMSYDGY-YGPPRANFNNPNVRDPPF 393


>10_07_0081 -
           12716130-12716271,12716367-12716449,12716729-12716785,
           12716886-12716942,12717014-12717113,12717204-12717274,
           12718284-12718460,12719142-12719312,12722151-12722234,
           12722310-12722354,12722447-12722537,12722745-12722863,
           12723213-12723434,12723630-12723854,12725366-12725571,
           12726081-12726258,12726702-12726762,12727930-12728039,
           12728126-12728257,12729136-12729208,12729608-12729645,
           12730373-12730474,12730565-12730622,12731071-12731172,
           12731240-12731386,12732023-12732159,12732256-12732405,
           12733103-12733259,12733615-12733673,12733982-12734138,
           12734209-12734354,12739177-12739320,12739478-12739606
          Length = 1309

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 45  YYPLMLTKFTPFAQRPDYYNLHTEENYERVRF 140
           Y   +L    PFA+ P  Y++H  E Y  V+F
Sbjct: 93  YTGRILIAVNPFAKLPHLYDMHMMEQYRGVQF 124


>04_01_0449 + 5830017-5830272,5830376-5830620,5831994-5833019
          Length = 508

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = -3

Query: 632 SWTWXFLIPSLLKYTLLLASNSKFSKNVVNLSTLTSVILTP*SKVCLE 489
           ++ W   +P   +YT L++ N+K  K   ++S + +V +TP  +V  E
Sbjct: 211 TYHWRMKMPETARYTALISKNAK--KAAKDMSAVLNVNITPDDEVINE 256


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,391,903
Number of Sequences: 37544
Number of extensions: 397708
Number of successful extensions: 1031
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)