Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30298.Seq
         (830 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814...   138   7e-33
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351...   135   5e-32
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213...    73   3e-13
01_01_0608 - 4513604-4513701,4513790-4513919,4514027-4514116,451...    29   4.5  
05_03_0162 - 9050981-9051003,9051141-9052273,9052388-9053310,905...    28   7.9  

>08_01_0835 +
           8147177-8147359,8147871-8147968,8148045-8148102,
           8148192-8148271,8148770-8148872,8148966-8149181
          Length = 245

 Score =  138 bits (333), Expect = 7e-33
 Identities = 62/123 (50%), Positives = 89/123 (72%)
 Frame = +1

Query: 256 LKRRSSAIKKKREIFKRAEQYVKEYRIKERDXIRLXRQARNRGNYYVPGEAKLAFVIRIR 435
           L  +  A++ ++ IF RA+QY +EY  +E++ ++L R+AR +G +YV  EAKL FV+RIR
Sbjct: 34  LAEKKKAVESRKLIFARAKQYAQEYDAQEKELVQLKREARMKGGFYVSPEAKLLFVVRIR 93

Query: 436 GINQVSPKSXXFXQXFRLXQIX*WLFVRLNKATVNMLRIAXXYIAWGYPNLKSVREXVYK 615
           GIN + PK+    Q  RL QI   +F+++NKAT+NMLR    Y+A+GYPNLKSVRE +YK
Sbjct: 94  GINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYK 153

Query: 616 RGF 624
           RG+
Sbjct: 154 RGY 156


>04_04_1075 +
           30634141-30634320,30634917-30635014,30635113-30635170,
           30635259-30635338,30635686-30635788,30635847-30636080
          Length = 250

 Score =  135 bits (326), Expect = 5e-32
 Identities = 60/120 (50%), Positives = 87/120 (72%)
 Frame = +1

Query: 265 RSSAIKKKREIFKRAEQYVKEYRIKERDXIRLXRQARNRGNYYVPGEAKLAFVIRIRGIN 444
           +  +I+ ++ IF RA+QY +EY  +E++ ++L R+AR +G +YV  E KL FV+RIRGIN
Sbjct: 36  KKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKREARMKGGFYVSPEEKLLFVVRIRGIN 95

Query: 445 QVSPKSXXFXQXFRLXQIX*WLFVRLNKATVNMLRIAXXYIAWGYPNLKSVREXVYKRGF 624
            + PK+    Q  RL QI   +F+++NKAT+NMLR    Y+A+GYPNLKSVRE +YKRG+
Sbjct: 96  AMHPKTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKRGY 155


>08_02_1442 +
           27120604-27120890,27121029-27121166,27121280-27121382,
           27121877-27122036,27122927-27123114,27123203-27124770,
           27124882-27125869,27126595-27127098,27127347-27127433,
           27127753-27127821,27128012-27128041
          Length = 1373

 Score = 72.9 bits (171), Expect = 3e-13
 Identities = 45/132 (34%), Positives = 71/132 (53%), Gaps = 5/132 (3%)
 Frame = +1

Query: 301 KRAEQYVKEYRIKERDXIRLXRQARNRGNYYVPGE---AKLAFVIRIRGINQVSPKSXXF 471
           KR E +V+E+R KE D +R+  + + R     P E   +KL F IRI G   + P     
Sbjct: 50  KRPEDFVREFRNKELDFVRMKTRLKVRK--LPPAETLNSKLVFAIRIPGTMDLHPHMRRI 107

Query: 472 XQXFRLXQIX*WLFVRLNKATVNMLRIAXXYIAWGYPNLKSVREXVYK--RGFRQAEWTT 645
            +  RL Q+   +F++   AT+  L +   +I +G+PNLK+V++ +YK  RGF   E   
Sbjct: 108 LRKLRLTQVLTGVFLKATDATMKRLLVVEPFITYGFPNLKNVKDLIYKKGRGFLDKEPFP 167

Query: 646 YTNSLPNSIVEK 681
            T+   N ++EK
Sbjct: 168 LTS---NDLIEK 176


>01_01_0608 -
           4513604-4513701,4513790-4513919,4514027-4514116,
           4514225-4514330,4514442-4514542,4514678-4514773,
           4514860-4514959,4515133-4515269,4515563-4515661,
           4515740-4515937,4516058-4516235,4516635-4516690,
           4516781-4516933,4517248-4517340,4517422-4517523,
           4517609-4517650,4517812-4517855,4518087-4518186,
           4518323-4518394,4518499-4518621,4519309-4519452
          Length = 753

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 670 IVEKKASINTTIFLXLKDLHPWXFFPXLEEKFQVTXE 780
           + EKKA++ T      ++L+P+  FP  EE F+V  E
Sbjct: 208 VEEKKAAVVTAAPPSEEELNPYSIFPQPEENFKVHTE 244


>05_03_0162 -
           9050981-9051003,9051141-9052273,9052388-9053310,
           9053560-9054615
          Length = 1044

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 625 RQAEWTTYTNSLPNSIVEKKASINTTIFLXLKDLHP 732
           R+A+W    +    S+ +    +N TI+L  +DLHP
Sbjct: 398 RRADWEKILHDSIWSVPQMPDELNYTIYLSYQDLHP 433


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,543,514
Number of Sequences: 37544
Number of extensions: 330563
Number of successful extensions: 658
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)