Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30292.Seq
(476 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841 95 3e-20
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848... 95 3e-20
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 76 2e-14
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078... 58 3e-09
08_02_0572 - 18842539-18842950,18843242-18843613,18844947-18845671 28 4.5
01_03_0260 - 14323503-14323603,14323751-14323990,14324212-143242... 27 5.9
01_01_0063 + 508387-509112 27 5.9
08_02_1238 + 25486263-25487574,25488210-25489117 27 7.8
05_01_0522 - 4506667-4507254,4507474-4507824,4507967-4508163,450... 27 7.8
03_05_0802 - 27823213-27823701,27823911-27823959,27824053-278241... 27 7.8
03_05_0796 + 27787401-27788831 27 7.8
03_01_0438 + 3399203-3399297,3399389-3399480,3399638-3399750,340... 27 7.8
>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
Length = 133
Score = 94.7 bits (225), Expect = 3e-20
Identities = 47/67 (70%), Positives = 51/67 (76%)
Frame = +3
Query: 234 YAPKWIPKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAAR 413
Y P K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I VTN AR
Sbjct: 67 YLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTKKRKEIVERAAQLDIVVTNKLAR 126
Query: 414 LRSQENE 434
LRSQE+E
Sbjct: 127 LRSQEDE 133
Score = 54.0 bits (124), Expect = 6e-08
Identities = 26/45 (57%), Positives = 33/45 (73%)
Frame = +2
Query: 35 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 169
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVR
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVR 44
Score = 51.2 bits (117), Expect = 4e-07
Identities = 21/30 (70%), Positives = 26/30 (86%)
Frame = +1
Query: 169 QRFKGQYLMPNIGYGSNKKTRHMLPNGFRR 258
++FKG LMPNIGYGS+KKTRH LPN F++
Sbjct: 45 RKFKGCTLMPNIGYGSDKKTRHYLPNKFKK 74
>08_02_1315 +
26083856-26083945,26084093-26084226,26084753-26084819,
26085011-26085192,26085315-26085444
Length = 200
Score = 94.7 bits (225), Expect = 3e-20
Identities = 47/67 (70%), Positives = 51/67 (76%)
Frame = +3
Query: 234 YAPKWIPKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAAR 413
Y P K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I VTN AR
Sbjct: 134 YLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIVVTNKLAR 193
Query: 414 LRSQENE 434
LRSQE+E
Sbjct: 194 LRSQEDE 200
Score = 51.2 bits (117), Expect = 4e-07
Identities = 21/30 (70%), Positives = 26/30 (86%)
Frame = +1
Query: 169 QRFKGQYLMPNIGYGSNKKTRHMLPNGFRR 258
++FKG LMPNIGYGS+KKTRH LPN F++
Sbjct: 112 RKFKGCTLMPNIGYGSDKKTRHYLPNKFKK 141
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +2
Query: 35 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 127
MA+ P+ IVKKR K+F R SDRY LK
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYLCLK 30
Score = 27.9 bits (59), Expect = 4.5
Identities = 9/13 (69%), Positives = 13/13 (100%)
Frame = +2
Query: 131 NWRKPRGIDNRVR 169
+WR+P+GID+RVR
Sbjct: 99 SWRRPKGIDSRVR 111
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 75.8 bits (178), Expect = 2e-14
Identities = 36/55 (65%), Positives = 41/55 (74%)
Frame = +3
Query: 234 YAPKWIPKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 398
Y P K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I ++
Sbjct: 67 YLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIVIS 121
Score = 54.0 bits (124), Expect = 6e-08
Identities = 26/45 (57%), Positives = 33/45 (73%)
Frame = +2
Query: 35 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 169
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVR
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVR 44
Score = 51.2 bits (117), Expect = 4e-07
Identities = 21/30 (70%), Positives = 26/30 (86%)
Frame = +1
Query: 169 QRFKGQYLMPNIGYGSNKKTRHMLPNGFRR 258
++FKG LMPNIGYGS+KKTRH LPN F++
Sbjct: 45 RKFKGCTLMPNIGYGSDKKTRHYLPNKFKK 74
>09_04_0630 +
19104678-19105463,19106169-19106348,19107775-19107864,
19108777-19108958,19109968-19109974,19111763-19111833,
19112188-19112224,19112433-19112603
Length = 507
Score = 58.4 bits (135), Expect = 3e-09
Identities = 27/49 (55%), Positives = 36/49 (73%)
Frame = +2
Query: 23 ETYKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVR 169
+TY+M + P+ IVKKR K+F R SDRY LK +WR+P+GID+RVR
Sbjct: 319 DTYEMVV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVR 366
Score = 51.2 bits (117), Expect = 4e-07
Identities = 21/30 (70%), Positives = 26/30 (86%)
Frame = +1
Query: 169 QRFKGQYLMPNIGYGSNKKTRHMLPNGFRR 258
++FKG LMPNIGYGS+KKTRH LPN F++
Sbjct: 367 RKFKGCTLMPNIGYGSDKKTRHYLPNKFKK 396
Score = 35.1 bits (77), Expect = 0.030
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +3
Query: 234 YAPKWIPKVLVHNVKELEILMMQNR 308
Y P K +VHNV ELE+LMM NR
Sbjct: 389 YLPNKFKKFVVHNVSELELLMMHNR 413
>08_02_0572 - 18842539-18842950,18843242-18843613,18844947-18845671
Length = 502
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/54 (29%), Positives = 21/54 (38%)
Frame = +2
Query: 233 ICSQMDSEGPSSQC*RAGNLDDAKQEVLRRDRSWCLFEEAEADRGKSPAAQHQS 394
+CS+ + EGP C R LRR WC + D G + H S
Sbjct: 370 LCSRQEEEGPDHCCRR-----------LRRQEQWCYYNSDVVDGGGEAVSLHVS 412
>01_03_0260 - 14323503-14323603,14323751-14323990,14324212-14324275,
14324349-14324654,14324841-14325055,14325551-14325845,
14325965-14326129,14326324-14327352,14333553-14333814,
14334135-14334631,14338714-14340123
Length = 1527
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 144 LEVLTTESAAVQGSILDAQHWLRFQQEDPSYAPKWIPKV 260
L ++ S A QGS + A +WL +Q ++ P KV
Sbjct: 971 LMLVLAVSVAWQGSTMAADYWLAYQTSGDAFRPALFIKV 1009
>01_01_0063 + 508387-509112
Length = 241
Score = 27.5 bits (58), Expect = 5.9
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Frame = +3
Query: 111 AMTNLRGIGVNLEV---LTTESAAVQGSILDAQHWLRFQQEDPSYAPKWIPKVLVHNVKE 281
A LRGI LE+ + + + + D +H+ Q D ++AP P+ L +K
Sbjct: 85 AAARLRGIKTTLELVKLIKADDVTLTLATDDLEHYALKQPGDATFAPAPSPEELDEAMKH 144
Query: 282 LEILMMQNRKYCAEI 326
E + CA +
Sbjct: 145 AEAAQEHVLRCCARV 159
>08_02_1238 + 25486263-25487574,25488210-25489117
Length = 739
Score = 27.1 bits (57), Expect = 7.8
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Frame = -1
Query: 374 GSFHDQLPLL----RRDTMSDLCAVLPVLHHQ 291
G+ H+Q P L RRD ++D+ A L +HH+
Sbjct: 466 GAVHEQRPALSWESRRDIVADVAAGLHYVHHE 497
>05_01_0522 -
4506667-4507254,4507474-4507824,4507967-4508163,
4508324-4508582,4508656-4508868,4508946-4509071,
4509159-4509296,4509376-4509721,4509822-4510088,
4510427-4510616,4510700-4510784,4510885-4511072,
4511262-4511457,4512027-4512113
Length = 1076
Score = 27.1 bits (57), Expect = 7.8
Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Frame = +3
Query: 192 DAQHWLRFQ--QEDPSYAPKWIPKVLVHNV--KELEILMMQNRKYCAEIAHGVSSKKRKL 359
D L F+ E +A KW+P HN+ + E Q Y + K+R+
Sbjct: 392 DGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRA 451
Query: 360 IVERAQQLSIRVTNAAARLRSQENE 434
+ ++ +R+ A+ + E
Sbjct: 452 MKREYEEFKVRINALVAKAQKVPEE 476
>03_05_0802 -
27823213-27823701,27823911-27823959,27824053-27824120,
27824208-27824276,27824391-27824460,27824556-27824635,
27824706-27824784,27824949-27825025,27825110-27825176,
27825285-27825381,27825478-27825574,27825701-27825739,
27825843-27825907,27826034-27826142,27826275-27826487
Length = 555
Score = 27.1 bits (57), Expect = 7.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 320 RDRSWCLFEEAEADRGKSPAAQHQSDECGRSPP 418
+ R++ LF+E D KSP AQ S SPP
Sbjct: 472 KKRAFRLFQEDSLDIRKSPEAQMNSPSSVLSPP 504
>03_05_0796 + 27787401-27788831
Length = 476
Score = 27.1 bits (57), Expect = 7.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 347 EAEADRGKSPAAQHQSDECGR 409
+ ++D GK QH+ DECG+
Sbjct: 393 DGDSDVGKMKIVQHKCDECGK 413
>03_01_0438 +
3399203-3399297,3399389-3399480,3399638-3399750,
3400345-3400610,3400793-3400864,3401023-3401098,
3401241-3401339,3401432-3401586,3401679-3401783,
3401880-3401966,3402459-3402543,3402626-3402734,
3403468-3403544,3403635-3403715,3404137-3404328,
3404415-3404528,3404650-3404742,3404864-3404990,
3405075-3405151,3405455-3405502,3405588-3405657,
3405737-3405810,3405895-3406005,3406222-3406300,
3406936-3408320
Length = 1293
Score = 27.1 bits (57), Expect = 7.8
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = -2
Query: 442 YIYSFSWERRRAAAFVTLMLSCWALSTISFRFFEE 338
Y+++ ER A + +TLM++C++L + F +
Sbjct: 177 YLFNSQLERNIALSIITLMITCFSLVVVGGFLFHK 211
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,163,039
Number of Sequences: 37544
Number of extensions: 243520
Number of successful extensions: 901
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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