Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30291.Seq
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1457 - 33741048-33741146,33741647-33741760,33741938-337420...    33   0.29 
03_05_0977 + 29355824-29357056                                         31   1.2  
11_06_0313 + 22306497-22308938                                         29   3.5  
11_05_0063 - 18756289-18756390,18756769-18756954,18757053-187572...    29   4.7  
05_01_0078 - 523366-525196,525622-525675,527135-529341                 28   8.2  

>04_04_1457 -
           33741048-33741146,33741647-33741760,33741938-33742052,
           33742154-33742560,33743342-33743476,33743576-33743970,
           33744225-33744916,33745014-33745097,33745195-33745286,
           33745374-33745457,33745535-33745714,33746258-33746302,
           33746399-33746692,33747199-33747585,33747713-33747899,
           33748042-33748118,33748936-33749067,33749315-33749416,
           33749744-33749827,33749902-33749992,33750105-33750178,
           33750644-33750664,33751433-33751477,33752427-33752561,
           33752693-33752752
          Length = 1376

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +3

Query: 321 DSLGVGSYG*TNTNSWKGNPSYVPXGSISLEGIVSEELNMSVGIFPW 461
           D +G G+YG         N  +V    +SLE I  E+LN+ +  F W
Sbjct: 24  DEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIPQEDLNIIMSTFMW 70


>03_05_0977 + 29355824-29357056
          Length = 410

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 213 DLLEEHVRLFEVLRRTGRSNG*PNG-LLSGTTDLNGSDSLGVGSYG*TNTN 362
           D+L   ++LF  L      N  PNG L S +TD   + S+  G  G T TN
Sbjct: 330 DVLNNQIKLFIDLTSAAELNYRPNGTLASASTDAENATSVDRGHDGNTGTN 380


>11_06_0313 + 22306497-22308938
          Length = 813

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
 Frame = -1

Query: 419 YAFEADAAXGYIRWIPLPAVCIRLSV*TDT*GVRAIQVCCSGQQTIRLSIRSPRSPQYFK 240
           Y FE  ++   +RW   P +    S+   +   + + +  S ++T  ++    R   +  
Sbjct: 686 YIFETPSSEQNLRWNYAPELLGEPSLSDSSETPKQLPIIISAKRTGNIA----RFMNHSC 741

Query: 239 QPNMFFKKVLVYHEGELFPYL--FNIPHYTP 153
            PN+F++ VL  H  E +P++  F I H  P
Sbjct: 742 SPNVFWQPVLYDHGDEGYPHIAFFAIKHIPP 772


>11_05_0063 -
           18756289-18756390,18756769-18756954,18757053-18757223,
           18757339-18757383,18758087-18758260,18758801-18758887,
           18759349-18759510,18759945-18760015,18760296-18760435,
           18760828-18760952,18761329-18761463,18762069-18762314,
           18762530-18762755,18763039-18763091
          Length = 640

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 361 FVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDR 263
           F   +PYEPTP +++ F  V  D      P DR
Sbjct: 79  FTAEFPYEPTPDQNQAFIDVDKDLTERETPMDR 111


>05_01_0078 - 523366-525196,525622-525675,527135-529341
          Length = 1363

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -1

Query: 302 CSGQQTIRLSIRSPRSPQYFKQP 234
           CS QQ + L   SP  PQ F QP
Sbjct: 25  CSSQQQLSLYNYSPSDPQLFSQP 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,617,203
Number of Sequences: 37544
Number of extensions: 272276
Number of successful extensions: 473
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)