Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30284.Seq
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1457 - 33741048-33741146,33741647-33741760,33741938-337420... 34 0.13
03_05_0977 + 29355824-29357056 31 1.2
10_08_0509 + 18419815-18422150,18422249-18422291,18423154-184234... 30 2.0
11_05_0063 - 18756289-18756390,18756769-18756954,18757053-187572... 29 4.7
09_06_0134 + 21065104-21065965,21066732-21066961,21067618-210678... 29 4.7
03_06_0011 - 30995083-30995108,30995850-30996038,30996063-30998856 29 4.7
07_03_1152 + 24392765-24392908,24393682-24393899,24394340-243944... 28 6.2
11_06_0313 + 22306497-22308938 28 8.3
08_01_0295 - 2379181-2379336,2379660-2380324,2381346-2382882 28 8.3
05_01_0078 - 523366-525196,525622-525675,527135-529341 28 8.3
03_01_0510 + 3841630-3844089,3844235-3844358,3844641-3844786,384... 28 8.3
>04_04_1457 -
33741048-33741146,33741647-33741760,33741938-33742052,
33742154-33742560,33743342-33743476,33743576-33743970,
33744225-33744916,33745014-33745097,33745195-33745286,
33745374-33745457,33745535-33745714,33746258-33746302,
33746399-33746692,33747199-33747585,33747713-33747899,
33748042-33748118,33748936-33749067,33749315-33749416,
33749744-33749827,33749902-33749992,33750105-33750178,
33750644-33750664,33751433-33751477,33752427-33752561,
33752693-33752752
Length = 1376
Score = 33.9 bits (74), Expect = 0.13
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 320 DSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELNMSVGIFPW 460
D +G G+YG N +V + +SLE I E+LN+ + F W
Sbjct: 24 DEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIPQEDLNIIMSTFMW 70
>03_05_0977 + 29355824-29357056
Length = 410
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 212 DLLEEHVRLFEVLRRTGRSNG*PNG-LLSGTTDLNGSDSLGVGSYG*TNTN 361
D+L ++LF L N PNG L S +TD + S+ G G T TN
Sbjct: 330 DVLNNQIKLFIDLTSAAELNYRPNGTLASASTDAENATSVDRGHDGNTGTN 380
>10_08_0509 +
18419815-18422150,18422249-18422291,18423154-18423487,
18423766-18423878,18424461-18424589,18424771-18424864,
18424967-18425050,18425859-18426047,18426897-18427017,
18427476-18427692
Length = 1219
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = -1
Query: 594 MNFYELDWFVQKVNPGPVSDNAFIY*LCIFKEDSLPMAEIYKLLDQG-KIPTDMFNS 427
M ++E ++++PG + N+ I+ LCIF + I ++LD+G + T FNS
Sbjct: 429 MRYFE-QMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNS 484
>11_05_0063 -
18756289-18756390,18756769-18756954,18757053-18757223,
18757339-18757383,18758087-18758260,18758801-18758887,
18759349-18759510,18759945-18760015,18760296-18760435,
18760828-18760952,18761329-18761463,18762069-18762314,
18762530-18762755,18763039-18763091
Length = 640
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 360 FVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDR 262
F +PYEPTP +++ F V D P DR
Sbjct: 79 FTAEFPYEPTPDQNQAFIDVDKDLTERETPMDR 111
>09_06_0134 +
21065104-21065965,21066732-21066961,21067618-21067841,
21067929-21068781
Length = 722
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +1
Query: 343 RIDEYKQLEGESIVCTLRQHQPRRHSVRGVEHVSRNLSLVQEL 471
+I YK+ E + I L +H+P + + + +EH+S ++ L
Sbjct: 598 KISAYKRAENKVIETKLLEHRPEQDAKQRMEHLSEKKEMLNVL 640
>03_06_0011 - 30995083-30995108,30995850-30996038,30996063-30998856
Length = 1002
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +2
Query: 359 NSWKGNPSYVPLGSISLEGIVSEELNMSVGIFPWSKSL*ISAIGKESSLKMQS 517
NS +GNPS P G +L V + +++ G P S S + + G S +++ S
Sbjct: 658 NSIQGNPSLQPCGLSTLANTVMKARSLAEGDVPPSDSATVDSGGGFSKIEIAS 710
>07_03_1152 +
24392765-24392908,24393682-24393899,24394340-24394454,
24394605-24394694,24394857-24395015,24395462-24395581,
24396173-24396283,24396531-24396615,24397439-24397575
Length = 392
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/77 (27%), Positives = 38/77 (49%)
Frame = -1
Query: 690 LNLMLPLTXSSRCSLDLNTMRTAFPSA*KINWMNFYELDWFVQKVNPGPVSDNAFIY*LC 511
+N ++ + S RC +DLN + K N EL + + V P DN+ I LC
Sbjct: 214 VNALVTVVQSVRCQVDLNKIFDQQAYGAK-NSSQLQELLEYSKSVPPNLRHDNS-ISTLC 271
Query: 510 IFKEDSLPMAEIYKLLD 460
I ++D + ++++ L+
Sbjct: 272 ICEQDPISLSKVESWLE 288
>11_06_0313 + 22306497-22308938
Length = 813
Score = 27.9 bits (59), Expect = 8.3
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Frame = -3
Query: 418 YAFEADAA*GYIRWIPLPAVCIRLSV*TDT*GVRAIQVCCSGQQTIRLSIRSPRSPQYFK 239
Y FE ++ +RW P + S+ + + + + S ++T ++ R +
Sbjct: 686 YIFETPSSEQNLRWNYAPELLGEPSLSDSSETPKQLPIIISAKRTGNIA----RFMNHSC 741
Query: 238 QPNMFFKKVLVYHEGELFPYL--FNIPHYTP 152
PN+F++ VL H E +P++ F I H P
Sbjct: 742 SPNVFWQPVLYDHGDEGYPHIAFFAIKHIPP 772
>08_01_0295 - 2379181-2379336,2379660-2380324,2381346-2382882
Length = 785
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 487 R*RVFFEDAKSVDERVI*DWARVNL 561
R R F++ AKSV+ER + DW NL
Sbjct: 297 RLRRFYKVAKSVEEREVLDWHLANL 321
>05_01_0078 - 523366-525196,525622-525675,527135-529341
Length = 1363
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 301 CSGQQTIRLSIRSPRSPQYFKQP 233
CS QQ + L SP PQ F QP
Sbjct: 25 CSSQQQLSLYNYSPSDPQLFSQP 47
>03_01_0510 +
3841630-3844089,3844235-3844358,3844641-3844786,
3844861-3844958,3845313-3845502
Length = 1005
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 296 GTTDLNGSDSLGVGSYG*TNTNSWKGNPSYVPLG-SISLEGIVSEELNMSV 445
G TD+ G D G+ +G + +K S PLG ++ V+ LN+SV
Sbjct: 55 GDTDVRGMDLNGIVKFGRHSVEVYKDEASKPPLGQGLNKPAEVTLMLNLSV 105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,564,244
Number of Sequences: 37544
Number of extensions: 305582
Number of successful extensions: 614
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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