Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30276.Seq
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0152 - 1168928-1169377                                          113   1e-25
11_01_0155 - 1287003-1287452                                          113   1e-25
07_03_0227 - 15398371-15398925                                         29   1.9  
11_06_0598 - 25391923-25393197                                         28   5.8  
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539...    27   7.7  

>12_01_0152 - 1168928-1169377
          Length = 149

 Score =  113 bits (271), Expect = 1e-25
 Identities = 50/60 (83%), Positives = 57/60 (95%)
 Frame = +3

Query: 255 AISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 434
           AI+KAL+A+YQKYVDEASKKE+KDI  +YDR+LLVADPRRCEPKKFGG GARAR+QKSYR
Sbjct: 90  AIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149



 Score = 97.9 bits (233), Expect = 5e-21
 Identities = 43/83 (51%), Positives = 59/83 (71%)
 Frame = +1

Query: 7   REPIQAVQVFGRKXTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKF 186
           R P   VQ FGRK TA AV+YCK G G+++VNG P++L+ P +L+ K  EPILL G+ +F
Sbjct: 7   RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66

Query: 187 SMVXIRXTVKGGGHVAQVYAIRQ 255
             + +R  V+GGG  +Q+YAIRQ
Sbjct: 67  KDIDMRIRVRGGGKTSQIYAIRQ 89


>11_01_0155 - 1287003-1287452
          Length = 149

 Score =  113 bits (271), Expect = 1e-25
 Identities = 50/60 (83%), Positives = 57/60 (95%)
 Frame = +3

Query: 255 AISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 434
           AI+KAL+A+YQKYVDEASKKE+KDI  +YDR+LLVADPRRCEPKKFGG GARAR+QKSYR
Sbjct: 90  AIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149



 Score = 97.9 bits (233), Expect = 5e-21
 Identities = 43/83 (51%), Positives = 59/83 (71%)
 Frame = +1

Query: 7   REPIQAVQVFGRKXTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKF 186
           R P   VQ FGRK TA AV+YCK G G+++VNG P++L+ P +L+ K  EPILL G+ +F
Sbjct: 7   RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66

Query: 187 SMVXIRXTVKGGGHVAQVYAIRQ 255
             + +R  V+GGG  +Q+YAIRQ
Sbjct: 67  KDIDMRIRVRGGGKTSQIYAIRQ 89


>07_03_0227 - 15398371-15398925
          Length = 184

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = -3

Query: 157 VPEVCTAAVWXQPSPMGARLHAAFH--DHACNTQLRW 53
           +P +C A  W  P+   A  H  FH     C+ + RW
Sbjct: 23  LPPLCRAPWWPSPASSAAATHLRFHPRHRRCHPRRRW 59


>11_06_0598 - 25391923-25393197
          Length = 424

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = -3

Query: 415 LARAPGPPNFLGSQRRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIRAF 263
           LA    PP  L S      TS L  + T +  ++    S+TY    AIR F
Sbjct: 254 LATLVSPPKLLQSLNISGITSGLPDWITELDQLTKITLSNTYLGEDAIRVF 304


>07_03_1553 -
           27653473-27653490,27653634-27653673,27653852-27653939,
           27654150-27654230,27654644-27655084,27655692-27656325
          Length = 433

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 20/72 (27%), Positives = 31/72 (43%)
 Frame = +1

Query: 37  GRKXTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKFSMVXIRXTVK 216
           G++  + A  + + G G   VN +  D   P +L ++          +      +  TVK
Sbjct: 295 GKRKCSIARVWIQPGDGKFIVNDKQFDSYFP-ILDHRADLLRPFTVTKTLGRWDVTCTVK 353

Query: 217 GGGHVAQVYAIR 252
           GGG   QV AIR
Sbjct: 354 GGGVSGQVGAIR 365


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,448,802
Number of Sequences: 37544
Number of extensions: 304169
Number of successful extensions: 732
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)