Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30272.Seq
         (780 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814...   110   1e-24
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351...   101   6e-22
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213...    66   2e-11
03_01_0270 - 2085461-2086205,2086260-2086339,2086598-2086690,208...    29   4.1  
03_02_0861 - 11873026-11874009,11874140-11874180,11876050-11876314     29   5.5  
01_06_0457 - 29524544-29525962,29526518-29526606,29526841-295268...    29   5.5  

>08_01_0835 +
           8147177-8147359,8147871-8147968,8148045-8148102,
           8148192-8148271,8148770-8148872,8148966-8149181
          Length = 245

 Score =  110 bits (264), Expect = 1e-24
 Identities = 52/89 (58%), Positives = 71/89 (79%)
 Frame = +2

Query: 422 EVRKVLQLFRLRQINNGVFVRLNKATVNMYVSPSLYIAWGYPNLKSVRELVYKRGFAKLS 601
           + RK+LQL RLRQI NGVF+++NKAT+NM      Y+A+GYPNLKSVREL+YKRG+ KL+
Sbjct: 101 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLN 160

Query: 602 GQRIPIHFPNSIVEKRLLKHNIYLCLKDL 688
            QRIP+   N ++E+ L KH+I +C++DL
Sbjct: 161 KQRIPLQ-NNKVIEEGLGKHDI-ICIEDL 187



 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 32/68 (47%), Positives = 47/68 (69%)
 Frame = +3

Query: 246 QEEREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 425
           +  + IF RA+QY +EY  +E++ ++L R+AR +G +YV  EAKL FV+RIRGIN + PK
Sbjct: 42  ESRKLIFARAKQYAQEYDAQEKELVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPK 101

Query: 426 SVKFCNCL 449
           + K    L
Sbjct: 102 TRKILQLL 109


>04_04_1075 +
           30634141-30634320,30634917-30635014,30635113-30635170,
           30635259-30635338,30635686-30635788,30635847-30636080
          Length = 250

 Score =  101 bits (242), Expect = 6e-22
 Identities = 52/95 (54%), Positives = 71/95 (74%), Gaps = 6/95 (6%)
 Frame = +2

Query: 422 EVRKVLQLFRLRQINNGVFVRLNKATVNMYVSPSLYIAWGYPNLKSVRELVYKRGFAKLS 601
           + RK+LQL RLRQI NGVF+++NKAT+NM      Y+A+GYPNLKSVREL+YKRG+ KL+
Sbjct: 100 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLN 159

Query: 602 GQRIPIHFPNSIVEKR------LLKHNIYLCLKDL 688
            QRIP+   N ++E+       L KH+I +C++DL
Sbjct: 160 KQRIPL-TNNKVIEESWCLYQGLGKHDI-ICIEDL 192



 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 31/68 (45%), Positives = 46/68 (67%)
 Frame = +3

Query: 246 QEEREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 425
           +  + IF RA+QY +EY  +E++ ++L R+AR +G +YV  E KL FV+RIRGIN + PK
Sbjct: 41  ESRKLIFSRAKQYAEEYEAQEKELVQLKREARMKGGFYVSPEEKLLFVVRIRGINAMHPK 100

Query: 426 SVKFCNCL 449
           + K    L
Sbjct: 101 TRKILQLL 108


>08_02_1442 +
           27120604-27120890,27121029-27121166,27121280-27121382,
           27121877-27122036,27122927-27123114,27123203-27124770,
           27124882-27125869,27126595-27127098,27127347-27127433,
           27127753-27127821,27128012-27128041
          Length = 1373

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 32/88 (36%), Positives = 57/88 (64%)
 Frame = +2

Query: 425 VRKVLQLFRLRQINNGVFVRLNKATVNMYVSPSLYIAWGYPNLKSVRELVYKRGFAKLSG 604
           +R++L+  RL Q+  GVF++   AT+   +    +I +G+PNLK+V++L+YK+G   L  
Sbjct: 104 MRRILRKLRLTQVLTGVFLKATDATMKRLLVVEPFITYGFPNLKNVKDLIYKKGRGFLDK 163

Query: 605 QRIPIHFPNSIVEKRLLKHNIYLCLKDL 688
           +  P+   N ++EK L ++ I +CL+DL
Sbjct: 164 EPFPL-TSNDLIEKALGEYGI-ICLEDL 189


>03_01_0270 -
           2085461-2086205,2086260-2086339,2086598-2086690,
           2086774-2086881,2087012-2087101,2087234-2087275,
           2087516-2087587,2090848-2090985,2091074-2092624
          Length = 972

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +3

Query: 183 EERGSSH*EITGYAKEAFFCHQEEREIFKRAEQYVKEYRIKERDEIRLARQARNRG 350
           + RG +H EIT    +A     ++R   +  ++ V   RIKER E R   +  +RG
Sbjct: 193 KSRGGNHGEITARDGDATIQESQKRPGKRWIDEPVGNDRIKERSERRTDGKRNSRG 248


>03_02_0861 - 11873026-11874009,11874140-11874180,11876050-11876314
          Length = 429

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 693 PXDSSTVWRKSFQVPRIKFPVGPSKF 770
           P D S VWR+S   P +KF    S+F
Sbjct: 177 PSDDSPVWRRSLASPELKFHNALSEF 202


>01_06_0457 -
           29524544-29525962,29526518-29526606,29526841-29526892,
           29527573-29527677,29528181-29528208,29528279-29528343,
           29528808-29528880,29528932-29529113
          Length = 670

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 517 AEPLHCLGIPQLKECX*VSIQTWIRQAEW 603
           A  LHC G+PQ+K        +W+R +E+
Sbjct: 106 ASVLHCSGLPQIKLLSRFRRSSWVRTSEY 134


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,531,372
Number of Sequences: 37544
Number of extensions: 389559
Number of successful extensions: 874
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)