Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30212.Seq
         (759 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0560 + 30244814-30244871,30244979-30245140,30245725-302457...    29   5.3  
07_03_0265 + 15976331-15976645,15977575-15977784,15977869-159779...    28   7.0  
12_02_0437 - 19084990-19087695                                         28   9.3  
02_01_0729 - 5465521-5466005,5466481-5466793,5466878-5467094,546...    28   9.3  

>01_06_0560 +
           30244814-30244871,30244979-30245140,30245725-30245786,
           30246170-30246214,30246358-30246363,30246424-30246624,
           30246735-30248024
          Length = 607

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +1

Query: 577 EIKAVAAGRAHTIILTDKEGVYTLG 651
           ++ AVAAG AHT+ LT    VY+ G
Sbjct: 4   KVVAVAAGEAHTLALTGDGEVYSWG 28


>07_03_0265 +
           15976331-15976645,15977575-15977784,15977869-15977916,
           15978307-15978675,15978736-15978747,15978763-15978870,
           15979156-15979493,15980313-15980430,15983247-15984107,
           15984457-15984750
          Length = 890

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 565 SLECEIKAVAAGRAHTIILTDKEGVYTLGNN 657
           SL C    VA G + T+ILT    VYT G+N
Sbjct: 184 SLCCGHGEVATGLSFTVILTTDGQVYTCGSN 214


>12_02_0437 - 19084990-19087695
          Length = 901

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 67  LIVVCLEI*LICMQLNF*YTGEVLFSC*IEFP 162
           LI +C    L+C++LN  Y GE L  C   FP
Sbjct: 789 LISLCKMANLVCLELNCAYDGEALRFCAEWFP 820


>02_01_0729 -
           5465521-5466005,5466481-5466793,5466878-5467094,
           5467797-5468116
          Length = 444

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 541 APIYIP--YKSLECEIKAVAAGRAHTIILTDKEGVYTLGNN 657
           A +Y+P    SL   + AVAAG  H++ ++ +  V+  G N
Sbjct: 54  ADVYVPTPVPSLPTSVAAVAAGHYHSLAVSAEGEVWAWGRN 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,537,049
Number of Sequences: 37544
Number of extensions: 395167
Number of successful extensions: 928
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)