Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30168.Seq
         (847 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0021 - 143576-143932,144434-144667,144988-145066,145138-14...    31   0.87 
05_06_0233 + 26599068-26599466,26601214-26601829,26601871-266019...    30   2.0  
02_02_0725 + 13367157-13367364,13367492-13367773,13367985-13369195     28   8.1  

>11_01_0021 -
           143576-143932,144434-144667,144988-145066,145138-145253,
           145717-145861,146048-146465,147206-147869
          Length = 670

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -2

Query: 654 PAHQFNKSQMSALHNQLQNHMILHLIA*CVQKSKIHYIIMSNSLPLCK 511
           P HQ       A HN L NH++ H     +  +K H+    ++LP  K
Sbjct: 76  PPHQLLLCIGIAFHNLLDNHLLHHFHTLLIHANKPHFDAFLSNLPFAK 123


>05_06_0233 +
           26599068-26599466,26601214-26601829,26601871-26601917,
           26602101-26602268
          Length = 409

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +1

Query: 4   RGTGGAFVLVLYDEIKKVL 60
           R TG A +LVLYDE+KK +
Sbjct: 318 RSTGAAAILVLYDEVKKFM 336


>02_02_0725 + 13367157-13367364,13367492-13367773,13367985-13369195
          Length = 566

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -2

Query: 726 GDMDWPATQRFFQWIKTINVNYXGPAHQFNKSQMSALHNQLQNHMI 589
           G+MDW AT  + Q  + + + Y    +   + + S  HN  ++HM+
Sbjct: 479 GNMDWMATNFYGQPARDMQLRYV--EYYVGEEETSLKHNYSRDHMV 522


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,688,411
Number of Sequences: 37544
Number of extensions: 365136
Number of successful extensions: 486
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)