Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30167.Seq
         (898 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1314 - 25721137-25721538                                         53   3e-07
10_01_0053 - 767131-767962,768517-769037,769384-769601,769720-76...    29   5.0  
09_04_0683 - 19431034-19431495,19431632-19431997,19432055-194323...    29   6.6  

>07_03_1314 - 25721137-25721538
          Length = 133

 Score = 53.2 bits (122), Expect = 3e-07
 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 8/104 (7%)
 Frame = +2

Query: 254 LTGYPLAINATDIKVKEVDFNPEFISRVIPKLDWEVLWVAADSIGHSDGLPR-------- 409
           +TGYPL +       KE + NPEF+  ++PK+DW  L  A  ++G  + LP         
Sbjct: 17  VTGYPLKLQVVKWSTKEAEPNPEFLRGMLPKIDWPALVAATQALGLPELLPEAPPTDAEL 76

Query: 410 SLENKYDENEEFLKKAHKXXXXXXXXXGHLTCPNLXDNFRFLKG 541
           S E    +    L++ H+         G L CP+    F   +G
Sbjct: 77  SAEGAAADEGSALRRLHRALLEIHIEEGALVCPDTDRCFPISRG 120



 Score = 31.9 bits (69), Expect = 0.71
 Identities = 13/20 (65%), Positives = 17/20 (85%)
 Frame = +1

Query: 517 RQFPISKGIPNMXLNEAEVQ 576
           R FPIS+G+PNM L+E EV+
Sbjct: 113 RCFPISRGVPNMLLHEDEVR 132


>10_01_0053 -
           767131-767962,768517-769037,769384-769601,769720-769825,
           769958-770017
          Length = 578

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -1

Query: 325 KFRIKIDFFNFNVCRVNCKRIASQTPFKHFEVSILWVISFIIIFVLCNF 179
           + R K  FFN+    +N   + + T     + ++ W ISF+I+ V+  F
Sbjct: 190 ELRRKGSFFNWYTFMINSGSLLASTVLVWLQDNVGWGISFVIVVVVMAF 238


>09_04_0683 -
           19431034-19431495,19431632-19431997,19432055-19432326,
           19433621-19433686,19433924-19433978,19434509-19434577,
           19435200-19435307,19435394-19435462,19435883-19436038,
           19436089-19436229,19436514-19436568,19437103-19437233,
           19437382-19437486
          Length = 684

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 353 WEVLWVAADSIGHSDGLP 406
           W++ WVA  +IGHS+ LP
Sbjct: 576 WQLWWVALRAIGHSECLP 593


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,576,661
Number of Sequences: 37544
Number of extensions: 291157
Number of successful extensions: 603
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)