Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30164.Seq
(888 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283... 144 1e-34
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986... 138 5e-33
08_02_0657 - 19749835-19751942,19753123-19753561 108 5e-24
06_01_0646 + 4678422-4678508,4679042-4679123,4679236-4679327,467... 31 1.2
02_05_0986 - 33334205-33334362,33334487-33334662,33334774-333349... 31 1.2
06_01_0057 - 483710-484309 29 4.9
05_07_0067 + 27463703-27463705,27464309-27464365,27464779-274648... 28 8.6
03_05_0339 + 23287620-23287676,23287784-23287849,23287937-232880... 28 8.6
>03_01_0364 -
2834446-2834742,2834838-2835197,2835281-2835562,
2835634-2835705,2835798-2836019,2836105-2836871,
2837206-2837434,2838027-2838189,2838313-2838350
Length = 809
Score = 144 bits (348), Expect = 1e-34
Identities = 95/224 (42%), Positives = 123/224 (54%), Gaps = 2/224 (0%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
L +G+ + CIVL+DD C + KIRM DVVS+ CP VKYGKRVHIL
Sbjct: 65 LLKGKKRKDTICIVLADDTCEEPKIRMNKVVRKNLRVRLGDVVSVHQCPDVKYGKRVHIL 124
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWL 582
PIDD+VEG+TGNLF+ +LKPYF+EAYRP+ + D F G S K I A +
Sbjct: 125 PIDDTVEGITGNLFDAFLKPYFLEAYRPLRKGDLFLVRGG---MRSVEFKVIETDPAEYC 181
Query: 583 LIP*YTVTVNRLNVRKKRKH*MLSAMMTSAV--VANNWAQIKEMVELPLRSSFTVSRLLE 756
++ T K+ L + V V AQI+E+VELPLR + + +
Sbjct: 182 IVAPDTEIFCDGEPIKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHP-QLFKSIG 240
Query: 757 *KLPRGILHVWGRLVTGKNTHWLVLLLMETGASSFLINGPGIMS 888
K P+GIL ++G +GK T + ETGA FLINGP IMS
Sbjct: 241 VKPPKGIL-LYGPPGSGK-TLIARAVANETGAFFFLINGPEIMS 282
Score = 111 bits (267), Expect = 7e-25
Identities = 64/118 (54%), Positives = 78/118 (66%), Gaps = 2/118 (1%)
Frame = +3
Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQL 689
VRGGMR+VEFKV+ETDP+ +CIVAPDT I CDGEPIKRE+EE L+ VGYDD+GG RKQ+
Sbjct: 161 VRGGMRSVEFKVIETDPAEYCIVAPDTEIFCDGEPIKREDEER-LDEVGYDDVGGVRKQM 219
Query: 690 GAN*GDGGVATAVILH--CFKAIGVKASTRHSPCMGPPXNRKKHSLARAVANGNRGFF 857
+ + H FK+IGVK + GPP + K +ARAVAN FF
Sbjct: 220 AQ---IRELVELPLRHPQLFKSIGVK-PPKGILLYGPPGSGKT-LIARAVANETGAFF 272
Score = 89.4 bits (212), Expect = 3e-18
Identities = 41/65 (63%), Positives = 51/65 (78%)
Frame = +2
Query: 62 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 241
+D K D STAIL RK PNRL+V+EA +DDNSV+ + ME+LQLFRGDTVLLKGK+
Sbjct: 11 SDPKGKKDFSTAILERKKSPNRLVVDEATNDDNSVIGMHPDTMEKLQLFRGDTVLLKGKK 70
Query: 242 RKETV 256
RK+T+
Sbjct: 71 RKDTI 75
>10_08_0170 +
15397381-15397418,15397519-15397681,15398419-15398647,
15398777-15399543,15399650-15399871,15399961-15400032,
15400100-15400408,15400491-15400850,15401199-15401492
Length = 817
Score = 138 bits (334), Expect = 5e-33
Identities = 89/224 (39%), Positives = 125/224 (55%), Gaps = 2/224 (0%)
Frame = +1
Query: 223 LAQGQTPQGNRCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 402
L +G+ + CIVL+D+ C + KIRM DVVS+ C VKYGKRVHIL
Sbjct: 65 LLKGKKRKDTICIVLADETCEEPKIRMNKVVRKNLRVRLGDVVSVHQCQDVKYGKRVHIL 124
Query: 403 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWL 582
PIDD+VEG+TGNLF+ +LKPYF+EAYRP+ + D F G K + + +
Sbjct: 125 PIDDTVEGITGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPTEYC--I 182
Query: 583 LIP*YTVTVNRLNVRKKRKH*MLSAMMTSAV--VANNWAQIKEMVELPLRSSFTVSRLLE 756
+ P + + ++++ + L + V V AQI+E+VELPLR + + +
Sbjct: 183 VAPDTEIFCDGEPIKREDEE-RLDEVGYDDVGGVRKQMAQIRELVELPLRHP-QLFKSIG 240
Query: 757 *KLPRGILHVWGRLVTGKNTHWLVLLLMETGASSFLINGPGIMS 888
K P+GIL ++G +GK T + ETGA FLINGP IMS
Sbjct: 241 VKPPKGIL-LYGPPGSGK-TLIARAVANETGAFFFLINGPEIMS 282
Score = 111 bits (267), Expect = 7e-25
Identities = 64/118 (54%), Positives = 78/118 (66%), Gaps = 2/118 (1%)
Frame = +3
Query: 510 VRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQL 689
VRGGMR+VEFKV+ETDP+ +CIVAPDT I CDGEPIKRE+EE L+ VGYDD+GG RKQ+
Sbjct: 161 VRGGMRSVEFKVIETDPTEYCIVAPDTEIFCDGEPIKREDEER-LDEVGYDDVGGVRKQM 219
Query: 690 GAN*GDGGVATAVILH--CFKAIGVKASTRHSPCMGPPXNRKKHSLARAVANGNRGFF 857
+ + H FK+IGVK + GPP + K +ARAVAN FF
Sbjct: 220 AQ---IRELVELPLRHPQLFKSIGVK-PPKGILLYGPPGSGKT-LIARAVANETGAFF 272
Score = 93.1 bits (221), Expect = 3e-19
Identities = 45/65 (69%), Positives = 52/65 (80%)
Frame = +2
Query: 62 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 241
AD K D STAIL RK PNRL+V+EA +DDNSVVAL ME+LQLFRGDTVLLKGK+
Sbjct: 11 ADPKGKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLKGKK 70
Query: 242 RKETV 256
RK+T+
Sbjct: 71 RKDTI 75
>08_02_0657 - 19749835-19751942,19753123-19753561
Length = 848
Score = 108 bits (260), Expect = 5e-24
Identities = 72/213 (33%), Positives = 109/213 (51%), Gaps = 2/213 (0%)
Frame = +1
Query: 256 CIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTG 435
C D++CPD ++R+ D+V++ PCP+++ KRV + P DDSVEG++G
Sbjct: 79 CYAQKDESCPDGRLRLSRGVRSNLHVRLGDLVTVKPCPTIRNAKRVQLRPFDDSVEGISG 138
Query: 436 NLFEVYLKPYFMEAYRPIHRDDTFRSAGACAPSSSKWSKQIHHHFASWLLIP*YTVTVNR 615
+LFE YLKPYFM+A RP+ + D F G K + ++ + +
Sbjct: 139 DLFEPYLKPYFMDALRPVKKGDRFLVRGHMHAVEFK-VMDTEPNNEPVIVAGDTEIFCDE 197
Query: 616 LNVRKKRKH*MLSAMMTSAV--VANNWAQIKEMVELPLRSSFTVSRLLE*KLPRGILHVW 789
+ K+ L V V AQI+E+VELPLR + + L + P+GIL ++
Sbjct: 198 GDPVKREDEERLDGPGYDDVGGVRKQLAQIRELVELPLRHP-KLFQTLGVRPPKGIL-LY 255
Query: 790 GRLVTGKNTHWLVLLLMETGASSFLINGPGIMS 888
G TGK T + E+GA ++NGP IMS
Sbjct: 256 GPPGTGK-TLLARAIAAESGAHFVVVNGPEIMS 287
Score = 72.5 bits (170), Expect = 4e-13
Identities = 52/121 (42%), Positives = 70/121 (57%), Gaps = 4/121 (3%)
Frame = +3
Query: 510 VRGGMRAVEFKVVETDPSPF-CIVAPDTVIHCD-GEPIKREEEEEALNAVGYDDIGGCRK 683
VRG M AVEFKV++T+P+ IVA DT I CD G+P+KRE+EE L+ GYDD+GG RK
Sbjct: 164 VRGHMHAVEFKVMDTEPNNEPVIVAGDTEIFCDEGDPVKREDEER-LDGPGYDDVGGVRK 222
Query: 684 QLGAN*GDGGVATAVILH--CFKAIGVKASTRHSPCMGPPXNRKKHSLARAVANGNRGFF 857
QL + + H F+ +GV+ + GPP K LARA+A + F
Sbjct: 223 QLAQ---IRELVELPLRHPKLFQTLGVR-PPKGILLYGPPGTGKT-LLARAIAAESGAHF 277
Query: 858 L 860
+
Sbjct: 278 V 278
Score = 62.5 bits (145), Expect = 4e-10
Identities = 34/63 (53%), Positives = 45/63 (71%), Gaps = 5/63 (7%)
Frame = +2
Query: 83 DLSTAILR--RKDRPNRLIVEEA---VSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRK 247
D STAIL +K PNRL+ ++A V+ DNS V LS+A ME+L +FRGD V L+G+RR+
Sbjct: 16 DYSTAILECAKKKSPNRLMADDAEGGVAVDNSTVTLSEATMEELGIFRGDLVTLRGRRRR 75
Query: 248 ETV 256
E V
Sbjct: 76 EAV 78
>06_01_0646 +
4678422-4678508,4679042-4679123,4679236-4679327,
4679441-4679518,4679635-4679696,4680272-4680993,
4681115-4681272
Length = 426
Score = 31.1 bits (67), Expect = 1.2
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = +3
Query: 651 VGYDDIGGCRKQLGAN*GDGGVATAVILH--CFKAIGVKASTRHSPCMGPPXNRKKHSLA 824
V Y+D+GGC++Q+ V +LH F +G+ + C GPP K LA
Sbjct: 165 VTYNDVGGCKEQIEKM---REVVELPMLHPEKFVKLGID-PPKGVLCYGPPGTGKT-LLA 219
Query: 825 RAVANGNRGFFL 860
RAVAN F+
Sbjct: 220 RAVANRTDACFI 231
>02_05_0986 -
33334205-33334362,33334487-33334662,33334774-33334955,
33335064-33335282,33335407-33335551,33336127-33336188,
33336282-33336359,33336517-33336608,33337086-33337167,
33337519-33337605
Length = 426
Score = 31.1 bits (67), Expect = 1.2
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = +3
Query: 651 VGYDDIGGCRKQLGAN*GDGGVATAVILH--CFKAIGVKASTRHSPCMGPPXNRKKHSLA 824
V Y+D+GGC++Q+ V +LH F +G+ + C GPP K LA
Sbjct: 165 VTYNDVGGCKEQIEKM---REVVELPMLHPEKFVKLGID-PPKGVLCYGPPGTGKT-LLA 219
Query: 825 RAVANGNRGFFL 860
RAVAN F+
Sbjct: 220 RAVANRTDACFI 231
>06_01_0057 - 483710-484309
Length = 199
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +3
Query: 87 YRPRSSVARTDPTVSLSKKQSAMTTQS-WHFHRPKWSNFNSSVVTQSCSR 233
Y P ART P ++ + A S W F WS+ S V+T+ SR
Sbjct: 62 YFPLGPAARTSPAGTVLCFEDARGGDSTWRFRYSYWSSSQSYVITKGWSR 111
>05_07_0067 +
27463703-27463705,27464309-27464365,27464779-27464844,
27464985-27465096,27465281-27465409,27466076-27466191,
27466364-27466440,27466678-27467163,27467255-27467570,
27467618-27467797
Length = 513
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 476 LTVRSIVTTPSGPRGHARRRVQSGRNRSITILHRGS 583
+ + +V T GP+G + +GR RS+T+ + G+
Sbjct: 27 MAISDLVKTTLGPKGMDKILQSTGRGRSVTVTNDGA 62
>03_05_0339 +
23287620-23287676,23287784-23287849,23287937-23288048,
23288240-23288368,23288795-23288866,23289245-23289360,
23289494-23289570,23289788-23290273,23290373-23290688,
23290769-23290915
Length = 525
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 476 LTVRSIVTTPSGPRGHARRRVQSGRNRSITILHRGS 583
+ + +V T GP+G + +GR RS+T+ + G+
Sbjct: 26 MAIADLVKTTLGPKGMDKILQSTGRGRSVTVTNDGA 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,807,068
Number of Sequences: 37544
Number of extensions: 560700
Number of successful extensions: 1488
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1479
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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