SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/09/19
 
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30074.Seq
         (450 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0016 - 8981218-8981290,8981512-8981558,8981688-8981842,898...    29   1.7  

>11_03_0016 -
           8981218-8981290,8981512-8981558,8981688-8981842,
           8981930-8982023,8982158-8982231,8982250-8982283,
           8982689-8982807,8983586-8983673,8983901-8983963,
           8983964-8984018,8984527-8984575,8985693-8985753,
           8986288-8986638
          Length = 420

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 213 GSFQLFNKILLLM*ELVIAFISMHY*YV 296
           GS  LFNK LLL  ++++  +S HY ++
Sbjct: 158 GSLLLFNKCLLLNVQVILFLVSYHYPHI 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,321,537
Number of Sequences: 37544
Number of extensions: 171403
Number of successful extensions: 208
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2022 -