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Last updated: 2022/09/19
 
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30054.Seq
         (765 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0167 - 12178587-12179203,12179243-12179375,12179540-121797...    29   3.1  

>04_03_0167 -
           12178587-12179203,12179243-12179375,12179540-12179726,
           12179800-12179963,12180016-12180234
          Length = 439

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +2

Query: 377 RVRDLHARXIVMLSVRLRVVVKIGRRTVPQKXWKELRGPPRRDFAIRRLTFNERR 541
           RVR + AR I+  +VR  V  +    T P    KE+RG       I  ++FN+ +
Sbjct: 143 RVRSVAARIILGTTVRKPVRRRCTWATTPGTVHKEVRGGTNHAHIINEMSFNKMK 197


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,144,673
Number of Sequences: 37544
Number of extensions: 223170
Number of successful extensions: 371
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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