Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302A04f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0187 + 12805788-12807007,12807059-12807186,12807811-128078...    29   2.3  
10_07_0057 + 12460986-12461036,12461108-12461161,12461420-124614...    28   5.2  
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120...    28   5.2  
06_01_0353 + 2545995-2546208,2546362-2546492,2546846-2546929,254...    27   6.9  
04_01_0613 - 8042568-8042686,8043107-8043206,8043550-8043594,804...    27   6.9  
04_04_0018 - 22178972-22179179,22179264-22179502                       27   9.1  

>06_02_0187 +
           12805788-12807007,12807059-12807186,12807811-12807859,
           12808508-12808853
          Length = 580

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
 Frame = -3

Query: 234 LSMIRLLTTFWMMEPLPWL-----SYSKL*RTALS*SPVRMLLYSFSSRSWLEVSADSST 70
           L+++ L+   W + P   L     + S      L  SP   +  SF S +    S D++T
Sbjct: 36  LALLTLIMALWQLHPYQPLVLLPAALSSSPCPLLPRSPTSGIAVSFLSTAAATNSTDTAT 95

Query: 69  TPALAASMHIANTTR 25
            P   A+  +A TTR
Sbjct: 96  VPTTTAAARVAATTR 110


>10_07_0057 +
           12460986-12461036,12461108-12461161,12461420-12461482,
           12461666-12461716,12461996-12462057,12462156-12462318,
           12462829-12462939,12463029-12463166,12463248-12463322,
           12463420-12463540,12464827-12464981,12465080-12465154,
           12465270-12465473,12465670-12465786
          Length = 479

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -3

Query: 330 MMSLKFNGKYFLTISCPLPTHSL*QYSMVFRLLSMI 223
           MM L   GK    I CP+P+HSL   SMV R  +++
Sbjct: 152 MMHLLIRGKKD-GILCPIPSHSLYTDSMVLRGATLV 186


>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
            34512493-34513964,34514114-34514377,34514761-34514978,
            34515759-34516030,34516190-34516559,34516578-34516797,
            34516819-34518931,34518941-34519193,34519269-34519401,
            34520597-34521114,34521207-34522115,34522195-34522368,
            34522833-34522882,34523963-34524035,34524413-34524477,
            34524736-34525522,34525622-34525878,34525989-34526109,
            34526315-34526956
          Length = 5320

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = +2

Query: 98   QDLEEKLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRRNTMEYCYKLWVG 277
            Q LE    N I+T   D  +RQ L        S++ N++ +  +D  +  +E C  +WVG
Sbjct: 1147 QLLELGKNNEIVT---DQVLRQELALVMPKIYSLLSNLIGSDEMDIVKVVLEGCRWIWVG 1203

Query: 278  NG 283
            +G
Sbjct: 1204 DG 1205


>06_01_0353 +
           2545995-2546208,2546362-2546492,2546846-2546929,
           2546972-2547316,2547327-2547582,2547683-2547879
          Length = 408

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +2

Query: 98  QDLEEKLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRRNTMEYC 259
           ++ + KL   I   +  + +  +L   S G G  IQN  +N  +  R N   YC
Sbjct: 156 KEYQSKLAALIGQKNATAILSDALYIVSTGTGDFIQNYYHNASLSSRYNVNSYC 209


>04_01_0613 -
           8042568-8042686,8043107-8043206,8043550-8043594,
           8043691-8043770,8045082-8046322,8047077-8047507
          Length = 671

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/67 (20%), Positives = 29/67 (43%)
 Frame = +2

Query: 23  LLVVFAMCMLAASAGVVELSADTSNQDLEEKLYNSILTGDYDSAVRQSLEYESQGKGSII 202
           +LV   +     S  ++ + A  ++ ++ EKLYN +   +   +      Y   GK  I 
Sbjct: 196 MLVSDTLIDAQVSCALMNMYASCADMEMAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIA 255

Query: 203 QNVVNNL 223
            ++ N +
Sbjct: 256 HSIFNGM 262


>04_04_0018 - 22178972-22179179,22179264-22179502
          Length = 148

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +3

Query: 36  LRCACSPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVR 164
           L CAC+PP R +      +  +   R   +AS    T  L VR
Sbjct: 18  LSCACAPPTRGTRRRRLAVAVRVRVRVRASASEAMATEKLGVR 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,664,852
Number of Sequences: 37544
Number of extensions: 304952
Number of successful extensions: 956
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)