Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301G11f
         (368 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0352 + 3102552-3105243,3105684-3105748,3105824-3106492           28   2.0  
06_01_0870 + 6623478-6624257                                           28   2.6  
02_04_0239 - 21191793-21191840,21192227-21193276                       28   2.6  
02_03_0119 - 15457691-15458687,15458768-15458934,15459019-15459123     27   3.5  
07_01_1005 + 8509777-8509968,8510059-8510205,8510326-8510544,851...    26   8.1  

>08_01_0352 + 3102552-3105243,3105684-3105748,3105824-3106492
          Length = 1141

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = -3

Query: 201 HRNFFYDRHFLNV-RVVMVQSMHFV-RYVDPEMCDFSVTKRLWLWQRVSQAHGDRGSQDE 28
           H+N F++  F++  R +   S H + R +    C     + LW+   +   +G+R S D 
Sbjct: 98  HKNRFFNGEFMSYFRKLGKTSWHKIARELKDSQCHLQNLRNLWVQYEIQLPNGNRVSTDV 157

Query: 27  ND 22
            D
Sbjct: 158 ED 159


>06_01_0870 + 6623478-6624257
          Length = 259

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 57  PG*PFARARA-VWSRKSHTFQDPRTLRSAYSAPSPHARSES 176
           P  P ARA A  W+R  H    P +  +A  AP+P  R+E+
Sbjct: 109 PSSPRARAAARFWARFFHGEVSPLSRAAAVLAPTPEERAEA 149


>02_04_0239 - 21191793-21191840,21192227-21193276
          Length = 365

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -3

Query: 81 WLWQRVSQAHGDRGSQDENDFVALVP 4
          W     + AHG  G  D  DFV LVP
Sbjct: 12 WEVLSAASAHGGGGEDDGEDFVVLVP 37


>02_03_0119 - 15457691-15458687,15458768-15458934,15459019-15459123
          Length = 422

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = +3

Query: 90  WSRKSHTFQDPRTLRS----AYSAPSPHARSESAYHKRS 194
           W++K+  F +P  L S    AY +PSP  + +  Y  RS
Sbjct: 234 WAKKTVMFPNPAFLASTSSAAYDSPSPSKKQKRFYKTRS 272


>07_01_1005 +
           8509777-8509968,8510059-8510205,8510326-8510544,
           8510652-8510761,8511337-8511391,8511447-8511631,
           8512537-8512599,8513713-8513782,8514159-8514242,
           8515925-8516159,8516213-8516517
          Length = 554

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
 Frame = +3

Query: 30  RPGC--HGRHEP-G*PFA-RARAVWSRKSHTFQDPR--TLRSAYSAPSPHARSESAYHKR 191
           RPGC  HG     G   A +A    S  + TF  P   TL   +S PSPH R+ S+    
Sbjct: 452 RPGCESHGAASSVGASVAGQAPQTASTTALTFSFPASTTLSPWWSPPSPHPRATSSPSTS 511

Query: 192 SSCDQGAAYHQRSSGRE 242
             C   A   ++ +  E
Sbjct: 512 PRCSPRAETARQGAAHE 528


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,233,805
Number of Sequences: 37544
Number of extensions: 197648
Number of successful extensions: 586
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)