Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0114
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0006 + 17008799-17009417,17010035-17010162,17010425-170106... 31 1.2
09_04_0430 + 17502387-17503505 29 3.5
05_01_0141 - 937428-937717,938483-938705 29 3.5
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767... 29 3.5
08_01_0498 - 4327502-4328395 29 4.7
11_04_0184 - 14645630-14645905,14645997-14646701 28 6.2
10_08_1042 - 22515298-22515354,22515614-22515709,22515806-225159... 28 6.2
09_06_0016 - 20240358-20240797,20241040-20241131,20241132-202412... 28 8.2
09_04_0747 + 19892090-19893304,19893471-19893602,19894168-198942... 28 8.2
06_03_0339 - 19687749-19690805 28 8.2
05_03_0317 - 12249228-12249275,12263876-12264518,12264954-122666... 28 8.2
>01_05_0006 +
17008799-17009417,17010035-17010162,17010425-17010650,
17010792-17010925,17010988-17011161,17011234-17012238
Length = 761
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 43 ESPDVGP-ALVEAPIVPSPVHVTPRSWTTYPSRPHS 147
E+P P AL EAP +P VTPR WT P S
Sbjct: 100 ETPRARPVALREAPFLPFGPEVTPRPWTGRKPLPKS 135
>09_04_0430 + 17502387-17503505
Length = 372
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = +2
Query: 14 PPCRPNVDTTRAQMSVLP*SKLPSSHPQSTSPLVPGQLTPLVHILININDAASATPVESV 193
P +P T + + LP P + PQST P Q TP + A+A P+E V
Sbjct: 166 PQPQPPPQPTPPRAAPLP--TPPRAPPQSTPPRAAPQSTPPQRVAPQPPATAAAPPIEPV 223
Query: 194 EP 199
P
Sbjct: 224 AP 225
>05_01_0141 - 937428-937717,938483-938705
Length = 170
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -2
Query: 411 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 301
GH+G + H GH G + H H GG+ H G+
Sbjct: 114 GHHGGLFGGHHGHHGGLFGGHHGH-HGGGLFGGHHGH 149
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = -2
Query: 411 GHNGRVSHDHGGHQGHVTNVHWA--RGHNGGVSHDHRGY 301
GH+G GGH GH + GH+GG+ H G+
Sbjct: 122 GHHGHHGGLFGGHHGHHGGGLFGGHHGHHGGLFGGHHGF 160
>03_03_0008 - 13674602-13674708,13675272-13675439,13676169-13676787,
13676868-13677330,13677855-13678036,13678093-13678235,
13678315-13678423,13679000-13679456,13680490-13682473,
13682507-13682626,13682920-13682971
Length = 1467
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Frame = +1
Query: 13 AAVPAKRGHYESPDVGPALVEAPIVPSPVHVTPRSW----TTYPSRPHSY*HQRCCQRYP 180
A+VP + H + P P + + P P PR W ++YP R H R R+
Sbjct: 1247 ASVPNEGYHMQPPPPPPPINQCPYRPPEPQQRPRPWSNNSSSYPERYRYDGHDRDHHRHD 1306
Query: 181 R 183
R
Sbjct: 1307 R 1307
>08_01_0498 - 4327502-4328395
Length = 297
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/67 (31%), Positives = 27/67 (40%)
Frame = -2
Query: 411 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRSAMITGE 232
G G GG G V + H+ GG+SH H G+ + G G A + G
Sbjct: 168 GEGGCCGGGGGGADGVVIDGHYPLA--GGLSHSHHGHQQQDGGGDVGLMMGGGDAGV-GY 224
Query: 231 TAGFSST 211
AG ST
Sbjct: 225 NAGAGST 231
>11_04_0184 - 14645630-14645905,14645997-14646701
Length = 326
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/72 (30%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Frame = -2
Query: 417 ARGHNGRVSHDHGGHQGHVTNVHWARG---HNGGVSHDHRGYTRSLGNNYRARYYDGRSA 247
A G G HD GG T H G H+G + G T G G
Sbjct: 88 AYGATGTGVHDAGGLMPGHTAGHGTTGTGVHHGAGAGLPAGQTAGYGTTGVTGAQHGAGG 147
Query: 246 MITGETAGFSST 211
+ TG TAG+ +T
Sbjct: 148 LGTGHTAGYGTT 159
>10_08_1042 -
22515298-22515354,22515614-22515709,22515806-22515988,
22516277-22516365,22516481-22516722,22517008-22518116
Length = 591
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 16 AVPAKRGHYESPDVGPALVEAPIVP 90
A PA GHYE+P +G + AP P
Sbjct: 486 ASPALGGHYEAPMLGDKVERAPSTP 510
>09_06_0016 -
20240358-20240797,20241040-20241131,20241132-20241250,
20241398-20241561,20241664-20241757,20242048-20242080,
20242361-20242478,20242712-20242812,20242882-20242962,
20243138-20243335,20243411-20243545,20243662-20243667,
20243727-20243805,20243845-20243896,20244328-20244388,
20244475-20244532,20245137-20245225,20246305-20246799
Length = 804
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 414 RGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHD 313
R H+ R SH H H+ H T + R H+ HD
Sbjct: 694 RAHSHRHSHHHDAHKRHKTELAGHRRHHVLHIHD 727
>09_04_0747 +
19892090-19893304,19893471-19893602,19894168-19894215,
19894697-19894766,19894936-19894963,19896021-19896519
Length = 663
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = -1
Query: 82 WELRLGQDRHLGSRSVHVWPARRQPRA 2
WE+ LG R LG V V RR PRA
Sbjct: 500 WEVDLGGSRQLGGSDVAVPVPRRFPRA 526
>06_03_0339 - 19687749-19690805
Length = 1018
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Frame = -2
Query: 396 VSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDG----RSAMITGET 229
V + G H HV A G+ G + R + ++ GN+ +A G R AM
Sbjct: 262 VHANFGSHNAHVETKRGADGNEAGGLKNKRKFAKATGNSSKASSVAGSKKRRKAMFESSE 321
Query: 228 AGFSST 211
+ S T
Sbjct: 322 SSASDT 327
>05_03_0317 -
12249228-12249275,12263876-12264518,12264954-12266682,
12283603-12283975,12284119-12284715
Length = 1129
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +2
Query: 11 LPPCRPNVDTTRAQMSVLP*SKLPSSHPQSTSPLVPGQLTPLVHILIN 154
+PP P V Q+ ++P + LP+ P T+P ++ VH L++
Sbjct: 363 VPPGLPPVRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLD 410
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,789,159
Number of Sequences: 37544
Number of extensions: 270229
Number of successful extensions: 1045
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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