Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0063
(812 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1114 + 24072771-24072858,24072960-24073176,24075101-24075974 34 0.12
10_08_0403 - 17635530-17635578,17635737-17635820,17636110-176362... 29 3.3
08_02_1477 - 27375872-27376723,27376825-27377091 29 3.3
12_01_0996 - 10084368-10084897,10084942-10085206 29 4.4
11_04_0158 + 14207463-14207629,14207724-14207774,14207874-142080... 28 7.7
11_01_0763 + 6402901-6403971,6404581-6404826 28 7.7
08_02_0866 + 22006822-22006899,22006997-22007080,22007621-220077... 28 7.7
03_05_0440 + 24322332-24322388,24323478-24323615,24323654-243237... 28 7.7
01_06_1112 + 34606171-34606266,34607170-34607231,34607932-346080... 28 7.7
>07_03_1114 + 24072771-24072858,24072960-24073176,24075101-24075974
Length = 392
Score = 34.3 bits (75), Expect = 0.12
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = -2
Query: 625 PNVRAQTALVMTWRLTWRFCWL-LAPEAASEVLPKP--AAQAKYQQSCCFHWLG*CAGCC 455
P +RA TAL+ T + F L +A + V+P P AK Q+ C G C G C
Sbjct: 4 PPLRATTALLATLLVAASFQDLTVAADGGGGVVPVPDSVCDAKCQKRCSLKVAGRCMGLC 63
Query: 454 W*SQHGCG 431
H CG
Sbjct: 64 KMCCHDCG 71
>10_08_0403 -
17635530-17635578,17635737-17635820,17636110-17636219,
17637507-17637638,17638497-17638576,17638877-17639008,
17639534-17639648,17640244-17640286,17640359-17640493,
17641347-17641414,17641473-17641478
Length = 317
Score = 29.5 bits (63), Expect = 3.3
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Frame = +2
Query: 497 LLVLGLGCRLRKDLRCC--FGSQQ-----PTKTPSEPPGHYQRRLRPHV 622
L+VLGLG LR L CC +GS++ P P G++ RL P V
Sbjct: 125 LIVLGLGTALRLALECCQEWGSRRSMPRLPMDGSMAPSGYHPVRLWPAV 173
>08_02_1477 - 27375872-27376723,27376825-27377091
Length = 372
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Frame = +3
Query: 519 AGFGRTSDAASGANNQQKRQVSLQVITNAVCARTFGNNVII-----ASTLCVDGSNGRST 683
+G G + G N++ R+ + Q+ R NN+++ AST +D +N S
Sbjct: 180 SGSGGVASGDVGDENERLRRENAQLARELSQMRKLCNNILLLMSKYASTQQLDAANASSA 239
Query: 684 CSGDSGGPLTSAAAEAST 737
++ + +AEA+T
Sbjct: 240 AGNNNNNNCSGESAEAAT 257
>12_01_0996 - 10084368-10084897,10084942-10085206
Length = 264
Score = 29.1 bits (62), Expect = 4.4
Identities = 22/74 (29%), Positives = 37/74 (50%)
Frame = +3
Query: 516 AAGFGRTSDAASGANNQQKRQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGD 695
AA GR A +GA +++ VSL V +A+ + G S+ V+G +T +G+
Sbjct: 87 AAAAGRLRLAEAGA--RRRGDVSLAVSASALQSGDRGGRASRVSSFRVEGQCWFATANGE 144
Query: 696 SGGPLTSAAAEAST 737
G L A+ A++
Sbjct: 145 VSGDLDRASGTAAS 158
>11_04_0158 +
14207463-14207629,14207724-14207774,14207874-14208002,
14209342-14209447,14209491-14209601,14210042-14210098,
14210903-14211727
Length = 481
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = +3
Query: 423 HHQPQPCWLHQQHPAHQPS---QWKQQLCWYLAWAAGFGRTSDA 545
HHQ QP QQH P +W L ++ A GRT DA
Sbjct: 328 HHQQQPMAAPQQHGGEAPEGDLKWPNGLSFFTALT---GRTEDA 368
>11_01_0763 + 6402901-6403971,6404581-6404826
Length = 438
Score = 28.3 bits (60), Expect = 7.7
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 9/91 (9%)
Frame = +3
Query: 480 QWKQQLCWYLAWAAGFGRTSDAASGANNQQKRQVSLQVITNAVC------AR---TFGNN 632
QW+Q L W+ G+ S G ++ ++R L + V AR G+
Sbjct: 155 QWRQWLLWHGRRRRGYAFGSSGCGGGDHGRRRHGGLGRLAKGVADGYIGPARHRLEEGSE 214
Query: 633 VIIASTLCVDGSNGRSTCSGDSGGPLTSAAA 725
+ A + D S GR G GG L + A
Sbjct: 215 IGWAQSGAADDSGGRLGARGGDGGRLGARGA 245
>08_02_0866 +
22006822-22006899,22006997-22007080,22007621-22007719,
22007864-22007908,22008170-22008265,22009150-22009227,
22009864-22009949,22010038-22010104,22010192-22010254,
22010332-22010433,22010559-22010663,22010748-22010840,
22011380-22011468,22012049-22012268,22012816-22012899,
22013221-22013337,22013399-22013473,22013589-22013675,
22013766-22013828,22014833-22014949,22015231-22015323,
22015794-22015919,22015992-22016092,22016917-22016996,
22017023-22017093,22017200-22017256,22017430-22017573
Length = 839
Score = 28.3 bits (60), Expect = 7.7
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -2
Query: 742 RSVDASAAADVRGPPESPLQVLRPLEPSTQRVEAMI-TLFPNVRAQTALVMTWRLTWRF 569
RSVDA+ +++V G + + RPLE + + + L P V A M LT+ F
Sbjct: 454 RSVDATTSSNVSGNSDIYVTWYRPLEKTVSCLSKLYHRLEPTVFTGLAQAMASNLTYNF 512
>03_05_0440 +
24322332-24322388,24323478-24323615,24323654-24323736,
24325038-24325128,24326091-24326189,24326356-24326418,
24327182-24327259,24329354-24329543,24329812-24330065,
24330159-24330531,24331193-24331276,24332085-24332371,
24332495-24332542,24333194-24333220,24333951-24333987,
24334063-24334250,24334343-24334521,24334595-24334877,
24335481-24335717,24335798-24335988,24336552-24336561,
24336844-24336984,24337073-24337288,24338437-24338727,
24338852-24339025
Length = 1272
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = -1
Query: 626 SKRAGADGVGNDLEAHLAFLLVVGSRSSIGGPSEAGSPGQVPAKLLL 486
+++A DG G+D AH+A L + G P ++ +PG+ ++ L
Sbjct: 296 NRQAKPDGNGDDEGAHVAALALAEVFQRGGSPQDSQTPGRSGDRMFL 342
>01_06_1112 +
34606171-34606266,34607170-34607231,34607932-34608019,
34608104-34608165,34608246-34608342,34608499-34608930,
34609042-34610061,34610151-34610282,34610354-34610470,
34610982-34611062,34611321-34611447,34611547-34611592,
34611663-34611708
Length = 801
Score = 28.3 bits (60), Expect = 7.7
Identities = 20/73 (27%), Positives = 31/73 (42%)
Frame = -2
Query: 739 SVDASAAADVRGPPESPLQVLRPLEPSTQRVEAMITLFPNVRAQTALVMTWRLTWRFCWL 560
S+D A D + PP + +Q +P EPS I LF Q + + + + L
Sbjct: 473 SIDLFAGFDQQLPPTTSVQQSQPAEPSISSTPQSIDLFAGFDQQLPPTTSVQQSQQAAPL 532
Query: 559 LAPEAASEVLPKP 521
+A E + L P
Sbjct: 533 VADEGWAFFLDTP 545
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,861,999
Number of Sequences: 37544
Number of extensions: 377938
Number of successful extensions: 1449
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1449
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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