Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30067
(619 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 50 2e-06
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 41 0.001
10_08_0584 + 18971761-18971834,18971852-18973133,18973197-189745... 31 0.73
12_02_0893 + 24077634-24078379,24079347-24080412,24080741-240808... 30 1.3
11_06_0693 - 26334574-26336121 30 1.3
11_02_0015 - 7355989-7357092 30 1.3
02_05_0549 + 29900714-29900953,29902224-29902323,29902578-299027... 30 1.3
06_03_0787 + 24598823-24598973,24600213-24600534,24602499-24602808 30 1.7
05_02_0100 + 6594787-6594878,6595443-6595728,6595809-6595887,659... 29 2.2
04_03_1017 + 21747044-21748051 29 2.2
04_03_0863 + 20397161-20397239,20397464-20397672,20397768-203978... 29 2.2
09_02_0625 + 11334418-11334499,11335067-11335164,11335758-113358... 29 3.9
01_06_0742 - 31611005-31611843,31611930-31612092,31613463-316135... 29 3.9
09_06_0052 - 20510441-20510590,20510692-20511058,20511183-20511664 28 6.8
07_03_0899 + 22421038-22422642 27 9.0
06_03_0852 - 25371461-25371783,25372080-25372159,25372472-253725... 27 9.0
06_03_0538 + 21913175-21914218 27 9.0
01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026... 27 9.0
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 49.6 bits (113), Expect = 2e-06
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Frame = +3
Query: 309 GENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDK 485
GE V + +GT G+ + +G ++ PV + LGRI N G+PID PI +
Sbjct: 105 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA 163
Query: 486 TAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKGERL 605
I + + + +E++ TGI +D++ A+G+++
Sbjct: 164 YLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKI 203
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 40.7 bits (91), Expect = 0.001
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Frame = +3
Query: 309 GENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDK 485
GE V + +GT G+ + +G ++ PV + LGR+ N G+PID PI +
Sbjct: 65 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRVFNGSGKPIDNGPPILPEA 123
Query: 486 TAAI------HAEAPEFVDMSVQ---QEILVTGIKVVDLLAPYAKGERL 605
I A A ++ S + +E++ TGI +D++ A+G+++
Sbjct: 124 YLDISDFDIGFAGAGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKI 172
>10_08_0584 + 18971761-18971834,18971852-18973133,18973197-18974509,
18993885-18993935,18994674-18994829,18995048-18995123,
18995317-18995364,18995445-18995489,18995580-18995679,
18995923-18995968,18996115-18996176,18996257-18996355,
18996536-18996609,18996721-18996790,18997074-18997162,
18997327-18997404
Length = 1220
Score = 31.1 bits (67), Expect = 0.73
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = -1
Query: 385 PESSTGCPRTKPSVPSMAMVRTVFSPKCWATSSTRRGDRFCTSRAFR 245
P ++ G PR PS P + PKC R G FCT F+
Sbjct: 868 PGATAGRPRLSPSDPEVVGTEAE-CPKCAQLKLLREGAAFCTQDCFK 913
>12_02_0893 +
24077634-24078379,24079347-24080412,24080741-24080866,
24081278-24081384,24081720-24081744
Length = 689
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -1
Query: 451 GSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPSVPSMAMV 326
GSP+ R + AP G+ G+P++ ++PS+P +++
Sbjct: 452 GSPVYAQSRSPIRAPLGVSFGDPKAQ----NSRPSIPHPSLI 489
>11_06_0693 - 26334574-26336121
Length = 515
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = -2
Query: 591 WHKERADRRLLYQLRESPAAQTCRQTLEL 505
WH A+RRLL+ L SP A+ R+ LEL
Sbjct: 20 WHPRTAERRLLHLLHHSPPAR--RRPLEL 46
>11_02_0015 - 7355989-7357092
Length = 367
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 361 RTKPSVPSMAMVRTVFSPKCWATSSTRRGD 272
RTKP P ++R WAT +TRR D
Sbjct: 14 RTKPKPPMSRLMRLSLKAVDWATDATRRAD 43
>02_05_0549 +
29900714-29900953,29902224-29902323,29902578-29902719,
29902720-29902826,29903179-29903480
Length = 296
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -2
Query: 423 RGFQLPPGYEWVSQSRVQVAHGLSLQYRPWQWSELCSHPNVGLP 292
RG++L Y+WV R QV + Q + ++ + PNVG P
Sbjct: 174 RGWRLSQSYQWVKDRRPQVQLTDASQNQLVEYEQKLFGPNVGAP 217
>06_03_0787 + 24598823-24598973,24600213-24600534,24602499-24602808
Length = 260
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = -2
Query: 327 SELCSHPNVGLPQVRGGEIDFAPQGHLE-SEAGYLRIA 217
++ C+ PN+GL GG +F P+ H E SEA +LR+A
Sbjct: 110 TDFCA-PNLGLSDDYGGWCNF-PKEHFEMSEAAFLRVA 145
>05_02_0100 +
6594787-6594878,6595443-6595728,6595809-6595887,
6595964-6596013,6597281-6597478,6597555-6597612,
6598388-6598496,6599253-6599321,6599684-6599812,
6599970-6600082,6600386-6600479,6602827-6602917,
6604145-6604233,6604715-6604856,6605849-6606196,
6606314-6607408
Length = 1013
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 330 IAMDGTEGLVRGQPVLDSGSPIRIPVGAE-TLGRIINVIGEPIDERGPI 473
I D E + P S S +P AE L I NV+GE +D+ GP+
Sbjct: 128 IVPDSEEESLPSSPETSSTSNYDMPDLAEQNLEHIYNVLGEMVDKEGPV 176
>04_03_1017 + 21747044-21748051
Length = 335
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = -1
Query: 415 SAPTGIRMGEPESSTGCPRTKPSVPSMAMVRTVFSPKCWATSSTRRGDRFCTSRAFRIGG 236
S P R P+ + P + P +PS A TV P+ + R C+SRA R+ G
Sbjct: 266 STPPPPRAASPDYTPSTPPSSP-LPSAAESFTVPPPRRYHPYQRSRSGGACSSRAIRVIG 324
>04_03_0863 +
20397161-20397239,20397464-20397672,20397768-20397874,
20397996-20398098,20398236-20398412,20398549-20398704
Length = 276
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 224 ELHIYHSTDNGNNLTLAFSCRF 159
ELH+ H+ +NGN LAF RF
Sbjct: 136 ELHMVHTNENGNITVLAFLYRF 157
>09_02_0625 + 11334418-11334499,11335067-11335164,11335758-11335831,
11335996-11336598,11336692-11337185,11338035-11338170,
11338417-11338488,11338581-11338652,11339078-11339226,
11340129-11340364,11340567-11340693,11341011-11341079,
11341172-11341361,11341465-11341857,11342084-11342195
Length = 968
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +1
Query: 106 NVEKSLQSMPLTRGTMLLNLQEKAKVRLLPLSVLW*MC 219
N E S+ SMP L NL+E AK LLP L+ +C
Sbjct: 920 NAELSINSMPTAS---LSNLEEYAKKSLLPAVALFALC 954
>01_06_0742 -
31611005-31611843,31611930-31612092,31613463-31613538,
31613615-31613731,31613852-31614016,31614100-31614190,
31614824-31614908,31615013-31615195,31615748-31615996
Length = 655
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = -2
Query: 318 CSHPNVGLPQVRGGEIDFAPQGHLESEAG 232
C+ P V LP+ RG + + PQGHL S AG
Sbjct: 30 CAGPVVSLPR-RGSAVVYLPQGHL-SAAG 56
>09_06_0052 - 20510441-20510590,20510692-20511058,20511183-20511664
Length = 332
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -1
Query: 409 PTGIRMGEPESSTGCPRTKPSVPSMAMVRTVFSP 308
P G++ P ++ GC P +P M + R V P
Sbjct: 40 PVGVQAAFPHAAAGCAPPPPVMPVMIVYRVVQPP 73
>07_03_0899 + 22421038-22422642
Length = 534
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -1
Query: 340 SMAMVRTVFSPKCWATSSTRRGDRFCTSRA 251
S+A V TVFSP W ++ R FC S A
Sbjct: 167 SVAGVLTVFSPNVWVYAALRFVCGFCRSTA 196
>06_03_0852 -
25371461-25371783,25372080-25372159,25372472-25372554,
25372597-25372740,25372836-25372946,25373238-25373354,
25373436-25373562,25374160-25374296
Length = 373
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 375 VQVAHGLSLQYRPWQWSELCSH 310
V + HGL + Y W W EL S+
Sbjct: 119 VLLFHGLMVAYWEWSWDELASY 140
>06_03_0538 + 21913175-21914218
Length = 347
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +3
Query: 246 LNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSP 392
L E + SP + A+HL + ++ D TE V+ V D G P
Sbjct: 233 LERFECGSWSPPPPMAPAEHLAQEVAKSSCADDTEAPVKMAFVFDHGEP 281
>01_05_0117 - 18300157-18301106,18301149-18301543,18302592-18302681,
18303723-18303836,18303903-18304046,18316147-18316312,
18316396-18317130,18317219-18317422,18317496-18318177,
18318272-18318528,18318604-18319298,18319345-18319382,
18319847-18319928,18320018-18320112,18320443-18320526,
18320601-18320891,18321521-18321853,18321948-18322150,
18322243-18322399,18322482-18322585,18322675-18322835,
18323511-18323824,18324317-18324589,18324666-18324967,
18325459-18325549,18326140-18326190,18326700-18326768,
18326926-18327017,18327082-18327148,18328582-18328746,
18329027-18329103,18329572-18329766,18330208-18330275,
18331081-18331172,18331399-18331522,18331608-18331705,
18332384-18332997,18333620-18333626
Length = 2892
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 231 NLPPILNALEVQNRSPRL-VLEVAQHLGENTVR 326
NLPP+L ++ +N + +L+ GEN +R
Sbjct: 2825 NLPPLLEVMQARNPGTHMAILDEVNEYGENVLR 2857
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,191,519
Number of Sequences: 37544
Number of extensions: 395515
Number of successful extensions: 1161
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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