Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30055
         (565 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0034 + 18507023-18507243,18507347-18507473,18508463-185085...    42   3e-04
02_04_0049 + 19238794-19239003,19239359-19239505,19239595-192397...    33   0.12 
12_02_1269 + 27462644-27463612                                         33   0.21 
04_04_1600 + 34704527-34704758,34705393-34706777                       30   1.5  
03_01_0642 - 4702726-4703052,4703127-4703193,4703280-4703360,470...    29   3.4  

>11_05_0034 +
           18507023-18507243,18507347-18507473,18508463-18508531,
           18508620-18508763
          Length = 186

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 29/128 (22%), Positives = 59/128 (46%), Gaps = 9/128 (7%)
 Frame = +2

Query: 185 FSSDTTNNMDTTYMEIPLYDVEKQQPLEKRKARLHYQSRKRGMLENDLLLSTFAKKYLNG 364
           F S  T             D+   +   +   RL Y+S++RG LE DL+L T+ +++++ 
Sbjct: 42  FLSGFTTTTQQNSASTTTIDLSSDESRRRLINRLVYRSKQRGFLELDLVLGTWVEQHIHS 101

Query: 365 FNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPEEFD---------NEIMDLLKKHAKNE 517
            +E       ++++  +   D++ W+  ++  PE  +         +++ D L KH+  E
Sbjct: 102 MDEANIRALLQVLDLENP--DLWKWLTSQEQPPEAVNSNPVFIAVKSKVTDNLSKHSSPE 159

Query: 518 DKIALRQP 541
            + A  QP
Sbjct: 160 TRSAPGQP 167


>02_04_0049 +
           19238794-19239003,19239359-19239505,19239595-19239750,
           19239870-19239992,19240073-19240241,19240700-19240782,
           19240917-19241018,19241104-19241192,19241317-19241407,
           19241734-19241847,19242371-19242447,19242534-19242612,
           19242710-19242778,19243022-19243197,19243309-19243365,
           19243460-19243550,19243644-19243742,19243878-19244063
          Length = 705

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
 Frame = +2

Query: 317 ENDLLLST--FAKKYLNGFNEKQTMMYDRLINSPSNDW----DIFYWIVEKKPTPEEFDN 478
           E+DL+  +  F+   L    +K   MY+R IN P+  W    D FYW  ++K  P E  +
Sbjct: 49  EHDLVYPSAEFSADALVPSPKKYQKMYERSINDPAGFWSEIADAFYW--KEKWNPSEVCS 106

Query: 479 EIMDLLK 499
           E +D+ K
Sbjct: 107 ENLDVTK 113


>12_02_1269 + 27462644-27463612
          Length = 322

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
 Frame = +2

Query: 266 EKRKARLHYQSRKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDW----DIF 433
           E+R  RL +  R R ++EN  L    A+        +Q  ++    N+PS DW    D  
Sbjct: 115 ERRSYRLTFHRRHRALVENAYLPHVLAEGRAVTVRNRQRRLF---TNNPSADWSAYDDAR 171

Query: 434 YWIVEKKPTPEEFDNEIMDLLKKHAKNED 520
            W   K   P  F    MD ++K    +D
Sbjct: 172 VWSHVKLEHPSTFATLAMDPVRKQEIIDD 200


>04_04_1600 + 34704527-34704758,34705393-34706777
          Length = 538

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 292 VMQSCFTFLQRLLFLNIIKRNLHVGCIHVV 203
           VM  C  F+QR L +N +++ + VGC+  +
Sbjct: 81  VMSGCILFIQRDLHINEVQQEVLVGCLSFI 110


>03_01_0642 -
           4702726-4703052,4703127-4703193,4703280-4703360,
           4703582-4703718,4703936-4704143,4704664-4704891,
           4705310-4705450,4705538-4705794
          Length = 481

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = -3

Query: 347 SQKC*VGDRFLTFLFFAIGNAILLYVS----PAVVVSQHHKEESPCRLYP 210
           +Q C     F+TFLF A G A+ +YV     PA+VV   H+++   R YP
Sbjct: 283 NQSC--AGHFITFLFQAYGRAVPVYVPVYLVPALVV---HRQDLLKRPYP 327


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,416,863
Number of Sequences: 37544
Number of extensions: 252675
Number of successful extensions: 613
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)