Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30054
(626 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 191 4e-49
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 187 5e-48
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 112 3e-25
10_06_0101 + 10736987-10737100,10737263-10737301,10737397-107374... 29 2.3
08_02_0077 - 11979497-11979654,11980012-11982178 29 3.0
03_06_0596 + 34964109-34964189,34964286-34964481,34964567-349647... 29 3.0
07_03_0123 - 13688562-13689146,13689233-13689583,13689665-136898... 29 4.0
12_02_0398 - 18586985-18587480,18587669-18587687,18588317-185885... 28 5.3
01_06_0457 - 29524544-29525962,29526518-29526606,29526841-295268... 28 7.0
03_02_0651 + 10183050-10184167,10184350-10184974,10185023-101852... 27 9.2
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 191 bits (465), Expect = 4e-49
Identities = 89/170 (52%), Positives = 122/170 (71%)
Frame = +3
Query: 114 KLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEI 293
K VPESVLK + L + A++ ++ IF RA+QY +EY +E++ +
Sbjct: 7 KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEYDAQEKELV 66
Query: 294 RPARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKAT 473
+ R+AR +G +YV EAKL FV+RIRGIN + PK RK+LQL RLRQI NGVF+++NKAT
Sbjct: 67 QLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKAT 126
Query: 474 VNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKKL 623
+NMLR EPY+A+GYPNLKSVREL+YKRG+ KL+ QRIP+ +N ++E+ L
Sbjct: 127 INMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLQNNKVIEEGL 176
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 187 bits (456), Expect = 5e-48
Identities = 85/164 (51%), Positives = 120/164 (73%)
Frame = +3
Query: 126 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRPAR 305
VPESVL+ + + + +I+ ++ IF RA+QY +EY +E++ ++ R
Sbjct: 10 VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKR 69
Query: 306 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 485
+AR +G +YV E KL FV+RIRGIN + PK RK+LQL RLRQI NGVF+++NKAT+NML
Sbjct: 70 EARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINML 129
Query: 486 RIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEK 617
R EPY+A+GYPNLKSVREL+YKRG+ KL+ QRIP+T+N ++E+
Sbjct: 130 RRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEE 173
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 112 bits (269), Expect = 3e-25
Identities = 62/178 (34%), Positives = 99/178 (55%), Gaps = 3/178 (1%)
Frame = +3
Query: 99 KEDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIK 278
+E +++LP V E+VLK + +R + KR E +V+E+R K
Sbjct: 3 EEGTQQLPYVRETVLKKRKVNEDWAVKNRERKAAKRQRRRDDGKGAIKRPEDFVREFRNK 62
Query: 279 ERDEIRPARQARNRGNYYVPGE---AKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGV 449
E D +R + R + P E +KL F IRI G + P +R++L+ RL Q+ GV
Sbjct: 63 ELDFVR--MKTRLKVRKLPPAETLNSKLVFAIRIPGTMDLHPHMRRILRKLRLTQVLTGV 120
Query: 450 FVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKKL 623
F++ AT+ L + EP+I +G+PNLK+V++L+YK+G L + P+TSN ++EK L
Sbjct: 121 FLKATDATMKRLLVVEPFITYGFPNLKNVKDLIYKKGRGFLDKEPFPLTSNDLIEKAL 178
>10_06_0101 +
10736987-10737100,10737263-10737301,10737397-10737474,
10737539-10737685,10737781-10737888,10738115-10738449,
10738572-10739544,10739702-10739980
Length = 690
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +3
Query: 192 TLKRRSSAIKKKREIFKRAEQYVKEYRIKE 281
TL+ R+ IK KRE+F+R KE+RI+E
Sbjct: 149 TLETRTDPIKLKREVFRRKR---KEHRIQE 175
>08_02_0077 - 11979497-11979654,11980012-11982178
Length = 774
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +1
Query: 136 QCSSIVRGERLFALGDYRLR*RGVL-LPSRRRGKSSRGLNSTSRNTASRNVMKSDQPDKH 312
QC S + G+ L + DY + L + + G++ G N + +++DQP+ +
Sbjct: 186 QCDSAIEGQELIHVEDYEQSEKTELKINGQENGENRAGKEQFDCNVPVKQEIRTDQPEAN 245
Query: 313 AI 318
+
Sbjct: 246 GV 247
>03_06_0596 +
34964109-34964189,34964286-34964481,34964567-34964775,
34964868-34964970,34965053-34965227,34965617-34965883,
34965966-34966311,34966396-34966533,34966645-34966770,
34966866-34967078,34967171-34967462,34967559-34967755,
34967844-34968194,34968290-34968874
Length = 1092
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +3
Query: 219 KKKREIFKRAEQYVKEYRIKERDEIRPARQARNRG 323
KKKR FKRAE Y + E DE P + G
Sbjct: 689 KKKRLFFKRAENQSPAYALGEIDEGAPGAENEKAG 723
>07_03_0123 -
13688562-13689146,13689233-13689583,13689665-13689861,
13689954-13690072,13690103-13690245,13690332-13690544,
13690649-13690774,13690891-13691028,13691109-13691454,
13691532-13691798,13691939-13691983,13692148-13692349,
13692405-13692507,13692599-13692810,13692891-13693113,
13693211-13693291
Length = 1116
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 219 KKKREIFKRAEQYVKEYRIKERDEIRPARQARNRG 323
KKKR FKRAE Y + E +E P + G
Sbjct: 713 KKKRSFFKRAENQSPAYALGEIEEGAPGAENEKAG 747
>12_02_0398 -
18586985-18587480,18587669-18587687,18588317-18588544,
18589699-18589966
Length = 336
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 337 PGKPNWHLSSESVVSTKFHRRSVKFCNCLDCAK 435
PG+ NW S +V TK R+S + N +D A+
Sbjct: 100 PGQANWFPDSNLLVDTKGRRQSRRIKNLMDEAE 132
>01_06_0457 -
29524544-29525962,29526518-29526606,29526841-29526892,
29527573-29527677,29528181-29528208,29528279-29528343,
29528808-29528880,29528932-29529113
Length = 670
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 500 LHCLGIPQLKECP*VSIQTWIRQAEW 577
LHC G+PQ+K +W+R +E+
Sbjct: 109 LHCSGLPQIKLLSRFRRSSWVRTSEY 134
>03_02_0651 +
10183050-10184167,10184350-10184974,10185023-10185208,
10185325-10185660
Length = 754
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 316 IVATTTFPGKPNWHLSSESVVSTKFH 393
+V +P NWHLSS S + K H
Sbjct: 573 VVLNDLYPKCSNWHLSSTSYLQAKRH 598
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,779,696
Number of Sequences: 37544
Number of extensions: 316194
Number of successful extensions: 782
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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