Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30049
(386 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1003 - 7939376-7939414,7939464-7939568,7939757-7939872,794... 29 1.7
08_01_0876 - 8598664-8599374 28 2.2
01_06_1303 - 36132588-36132710,36133879-36134103,36134318-361347... 28 2.2
06_03_1343 - 29463880-29464054,29464460-29464611,29464734-294648... 27 3.9
03_02_0915 + 12360079-12360095,12360225-12361353 27 3.9
12_01_0046 - 373974-374188,374298-374580,374698-374764,375705-37... 27 5.2
06_03_1325 - 29334401-29334859,29335163-29335857,29336538-293367... 27 5.2
03_02_0463 - 8673313-8673639,8674040-8674126,8674710-8674790,867... 27 5.2
03_05_0172 - 21488504-21488752,21488862-21489611,21489691-214897... 27 6.9
04_04_1189 + 31586991-31587291,31587358-31587397,31587449-315875... 26 9.1
03_02_0348 + 7709894-7709926,7710516-7710604,7711202-7711277,771... 26 9.1
>01_01_1003 -
7939376-7939414,7939464-7939568,7939757-7939872,
7941494-7942760
Length = 508
Score = 28.7 bits (61), Expect = 1.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 272 RVMRLWSM*VALKYGISNWNTGISYCE 192
R R W++ AL GISNW+ I+ E
Sbjct: 409 RFTRAWTLPRALSSGISNWSNAINLAE 435
>08_01_0876 - 8598664-8599374
Length = 236
Score = 28.3 bits (60), Expect = 2.2
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Frame = +2
Query: 101 STGPASWTITNASPT---TWPRTRNVSRAEGRSPR----STRYRC 214
++GP WT+ A+P T P++R R RSPR + R RC
Sbjct: 152 ASGPRRWTMDGAAPLLPETSPKSRRGRRGGRRSPRRGPRTRRRRC 196
>01_06_1303 -
36132588-36132710,36133879-36134103,36134318-36134713,
36135352-36135547,36135591-36135740,36135818-36135924,
36135987-36136094,36136354-36136435,36136436-36136536,
36136778-36136996,36137455-36137583,36137665-36137742,
36137816-36137929,36138071-36138230,36139224-36139441
Length = 801
Score = 28.3 bits (60), Expect = 2.2
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +1
Query: 244 TYIDHNLITRNHDKCRVSEFYDNVRTLKTVLTVDCPWLNFESN 372
TY+ +I NH R+ EF + L ++C W+ N
Sbjct: 139 TYVIPGIINYNHS--RIDEFIKKAQDLLDPTVLECAWMELSEN 179
>06_03_1343 -
29463880-29464054,29464460-29464611,29464734-29464889,
29465010-29465316,29465411-29465527,29465600-29465934
Length = 413
Score = 27.5 bits (58), Expect = 3.9
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = -1
Query: 257 WSM*VALKYGISNWNTGISYCEGICPLPGIHFEFAA 150
W L+YG+ WN G+ G C L G + A
Sbjct: 219 WLTSAMLQYGLETWNLGVICLIGNCFLMGAYLVIQA 254
>03_02_0915 + 12360079-12360095,12360225-12361353
Length = 381
Score = 27.5 bits (58), Expect = 3.9
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Frame = +1
Query: 112 CFLDDY--KCISDHLAANSKCIPG 177
C D + +CI DH+AA S+C G
Sbjct: 190 CCFDSFCDRCIRDHIAAKSRCACG 213
>12_01_0046 -
373974-374188,374298-374580,374698-374764,375705-375889
Length = 249
Score = 27.1 bits (57), Expect = 5.2
Identities = 9/34 (26%), Positives = 17/34 (50%)
Frame = -2
Query: 211 PVSRTARGSALCPGYISSSRPGGRRCICNRPRSR 110
P+ + + A C G++ P GR+ +C + R
Sbjct: 181 PLGQYRKSCAFCRGHLDILHPMGRKFVCGNDKDR 214
>06_03_1325 -
29334401-29334859,29335163-29335857,29336538-29336750,
29338791-29339472,29339781-29340020
Length = 762
Score = 27.1 bits (57), Expect = 5.2
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -2
Query: 214 TPVSRTARGSALCP-GYISSSRPGGRRCICNRPRSRACRS 98
T + A G+ CP G I S+ PGG C C ++ +S
Sbjct: 307 TDIDVCAPGNDGCPDGMICSNFPGGHNCSCPEGEHKSNKS 346
>03_02_0463 -
8673313-8673639,8674040-8674126,8674710-8674790,
8674896-8675048,8675129-8675185,8675293-8675569,
8675634-8675749,8676372-8676523,8676627-8676816,
8676935-8677345
Length = 616
Score = 27.1 bits (57), Expect = 5.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 196 ARGSALCPGYISSSRPGGRRCICNRPRSRACRSDSAA 86
AR + G +SR GG RC +P + A + SAA
Sbjct: 30 ARAAVAAGGRRRTSRRGGVRCSAGKPEASAVINGSAA 66
>03_05_0172 -
21488504-21488752,21488862-21489611,21489691-21489789,
21489862-21490776,21490847-21490976,21491438-21491583,
21491801-21491896,21492521-21492613,21492702-21492755,
21492897-21492956,21493046-21493171,21493283-21493366,
21493444-21493587,21493667-21493963
Length = 1080
Score = 26.6 bits (56), Expect = 6.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 134 ASPTTWPRTRNVSRAEGRSPRSTR 205
ASP P +N S A G SPRS++
Sbjct: 46 ASPPMSPAAKNSSAAPGASPRSSK 69
>04_04_1189 + 31586991-31587291,31587358-31587397,31587449-31587534,
31587535-31588097,31588250-31589913,31589956-31590066,
31590152-31591181,31591234-31591406,31591535-31591814,
31592275-31592331
Length = 1434
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 292 VSEFYDNVRTLKTVLTVDCPWLNFES 369
++E +VR+LKT+ DCP + F S
Sbjct: 1120 LTEMLSHVRSLKTLKLHDCPQIKFLS 1145
>03_02_0348 + 7709894-7709926,7710516-7710604,7711202-7711277,
7712019-7712214,7712449-7712832,7712884-7714804,
7714906-7714966,7715952-7716371
Length = 1059
Score = 26.2 bits (55), Expect = 9.1
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3
Query: 90 AESDLQALLLGRLQMHLRPPGRELEMYPGQRAD 188
AE L+LGR +RPP + P QR +
Sbjct: 932 AECQETILILGRQLQSMRPPAESMGSSPNQRME 964
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,281,641
Number of Sequences: 37544
Number of extensions: 203319
Number of successful extensions: 535
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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