Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10a23f
(570 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0374 - 2843405-2843508,2844134-2844239,2844327-2844409,284... 31 0.65
09_01_0083 + 1187861-1188340 31 0.65
05_05_0348 + 24271764-24271898,24273055-24273144,24273205-242733... 29 2.0
03_06_0090 + 31570588-31570710,31570962-31571080,31572215-315722... 29 2.6
03_05_0619 - 26180980-26181105,26181329-26181417,26181518-261816... 29 2.6
02_03_0144 + 15694766-15694883,15694980-15697612 29 2.6
08_02_0610 + 19307537-19308011,19308187-19310846 29 3.4
04_01_0179 + 2021977-2024890,2025117-2025610 29 3.4
02_05_0924 - 32749682-32750200,32750756-32750959,32751062-327511... 29 3.4
12_02_1096 + 26050224-26051058,26051599-26051831,26051940-260522... 28 4.6
11_06_0347 + 22555087-22555943,22556638-22558783 28 4.6
08_02_1360 + 26391141-26391287,26392256-26392627,26393372-26393860 28 4.6
02_05_1040 - 33709588-33709880,33709960-33710200,33710498-337106... 28 4.6
01_01_0987 + 7803281-7803910,7803989-7804510 28 6.0
12_02_1101 - 26079214-26080368 27 8.0
04_04_0044 - 22333376-22333898,22335509-22336227 27 8.0
>11_01_0374 -
2843405-2843508,2844134-2844239,2844327-2844409,
2844886-2845078,2845527-2845662,2846185-2846264,
2846348-2846932,2847058-2847126,2847203-2847347,
2847442-2847542,2848208-2849066,2849397-2849536,
2849606-2849783,2849885-2850287,2850770-2850833,
2851223-2851278,2851470-2851572
Length = 1134
Score = 31.1 bits (67), Expect = 0.65
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -2
Query: 431 LHRVRNRRLGVHQHRFGEVHPFPNWRRNSAGP 336
L ++ R+L H HR V P WRR P
Sbjct: 116 LSQLSKRQLSAHDHRLSTVAPVSRWRRKVGSP 147
>09_01_0083 + 1187861-1188340
Length = 159
Score = 31.1 bits (67), Expect = 0.65
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Frame = +2
Query: 161 RGRRRANKGFRGAGRV---DSGRTEESTAPAQLLDLDERYRENANHRRTLQILCRVREDA 331
R RRR +G GAGR+ D+GR ++ER + RT + C +R
Sbjct: 89 RWRRRLRRGRGGAGRISCQDAGRRRSERG-----GVEERRLRGSGWMRT-EERC-LRRIG 141
Query: 332 VTARRCSGAS-SGMDGP 379
V A+ C G S + MDGP
Sbjct: 142 VQAKSCGGISCAWMDGP 158
>05_05_0348 + 24271764-24271898,24273055-24273144,24273205-24273303,
24273725-24273826,24273912-24274088,24274193-24274398,
24274491-24274575,24274641-24274798,24274873-24274948,
24275117-24275245,24275313-24275457,24275561-24275691,
24276183-24276335,24276447-24276636,24277006-24277139,
24277248-24277406,24277659-24277964,24278040-24278216,
24278446-24278529,24278592-24278822,24278913-24279002,
24279090-24279211,24279293-24279448,24279477-24279635,
24279705-24279765,24280004-24280138,24280384-24280471,
24280548-24280620,24280883-24280994,24281691-24281711
Length = 1327
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 141 MWRQSDLGGDVELTKAFVALDELIQAVPRSRRPPLNSW 254
M++ LGGD EL + +LD + V S RPP SW
Sbjct: 1183 MYQMITLGGDAEL-ELVDSLDPFSEGVVFSVRPPKKSW 1219
>03_06_0090 +
31570588-31570710,31570962-31571080,31572215-31572284,
31572544-31573492,31574789-31575699
Length = 723
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 320 REDAVTARRCSGASSGMDGPHR 385
RE+A AR CSG G G HR
Sbjct: 700 REEAAAARACSGCRRGRRGEHR 721
>03_05_0619 -
26180980-26181105,26181329-26181417,26181518-26181629,
26181711-26181848,26182004-26182150,26182458-26182532,
26182627-26182668,26183033-26183152,26183806-26183880,
26184051-26184113,26184690-26184759,26184877-26185006,
26185097-26185328
Length = 472
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 195 ALDELIQAVPRSRRPPLNSWIWTNAIEKMQ 284
ALD+++ +P+ RR L S TN + K+Q
Sbjct: 206 ALDDILNVIPKERRTFLFSATMTNKVSKLQ 235
>02_03_0144 + 15694766-15694883,15694980-15697612
Length = 916
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +2
Query: 326 DAVTARRCSGASSGMDGPHRSGADGPQVVCYELDEETGRADEPRRGCHLPPRHATGGRH 502
D +A+ C G S DG +SG C++ DE T ++ + H+ + T H
Sbjct: 457 DGESAKLCEGTISSFDGHLKSGQ------CFQEDEPTADGNKQKEESHMGNNNVTDCAH 509
>08_02_0610 + 19307537-19308011,19308187-19310846
Length = 1044
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 162 GGDVELTKAFVALDELIQAVPRSRRP 239
GG++ L + A+D ++Q+VPR R P
Sbjct: 976 GGEIVLVSSSPAMDGVLQSVPRRRTP 1001
>04_01_0179 + 2021977-2024890,2025117-2025610
Length = 1135
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -3
Query: 202 SSATKAFVSSTSPPKSDCLHIGSDTFLHNSSSKAYS 95
++A SS++PP S GS ++NSSSKA S
Sbjct: 1098 AAAAATSTSSSTPPSSSSFS-GSSAMIYNSSSKAKS 1132
>02_05_0924 - 32749682-32750200,32750756-32750959,32751062-32751109,
32751769-32751819,32751907-32752032,32752117-32752257,
32752750-32752971,32753160-32753312,32753536-32753718,
32753964-32754110,32754212-32754319,32754426-32754530,
32754824-32754928,32755243-32755310,32755498-32755576,
32755876-32755935,32756023-32756076,32756168-32756233,
32756701-32756753,32757042-32757096,32757645-32757787,
32758236-32758333,32758436-32758716
Length = 1022
Score = 28.7 bits (61), Expect = 3.4
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 125 ERVGSDVETIRFRGRRRANKGFRGAGRVDSGRTEESTAPAQLLDLDERY-RENA 283
E++ S++ ++R RRAN G RG R R E PA D + Y RE A
Sbjct: 911 EKLASELASVRSPTPRRANSGLRGTRRDSISRRHE---PAPRRDNNAGYEREKA 961
>12_02_1096 +
26050224-26051058,26051599-26051831,26051940-26052230,
26052860-26052988,26053082-26053255,26053334-26053547,
26053881-26053968,26054195-26054239,26056969-26057015,
26057441-26057727,26057812-26058051,26058141-26058257
Length = 899
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +2
Query: 218 RTEESTAPAQLLDLDERYRENANHRRTLQILCRVREDAVTARRCSGASSGMD 373
R E P ++L L+ R R + +HR L++ R A RC G S D
Sbjct: 225 RAVEGEEPPRILHLNPRLRGDWSHRPVLEMNTCFRMQWGKAHRCDGNPSKDD 276
>11_06_0347 + 22555087-22555943,22556638-22558783
Length = 1000
Score = 28.3 bits (60), Expect = 4.6
Identities = 21/76 (27%), Positives = 36/76 (47%)
Frame = +3
Query: 339 PGAVPAPVREWMDLTEAVLMDPKSSVTNSMKKLGELMSHGEAVTYRLVMLQEGGTDVCTL 518
PG PAP+ + TE V MD N +++ + ++Y L ++ GG TL
Sbjct: 159 PGDHPAPLPRLIGTTEPVGMD---DAMNDLQRWFMVSKQNSQISY-LAIVGSGGLGKTTL 214
Query: 519 QMSPHQLIYDIYNTIA 566
MS ++ D +++ A
Sbjct: 215 AMSFYRKFGDEFDSRA 230
>08_02_1360 + 26391141-26391287,26392256-26392627,26393372-26393860
Length = 335
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 295 DITNTLPSSRGRSHGPALFRRQFGNGWTSPKRC 393
D+ L R + P RR+ G GWT+P +C
Sbjct: 301 DLAAVLRDWRNYTAAPPAARRRGGFGWTTPGKC 333
>02_05_1040 -
33709588-33709880,33709960-33710200,33710498-33710672,
33710781-33710892,33711906-33712145,33712253-33712436
Length = 414
Score = 28.3 bits (60), Expect = 4.6
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +2
Query: 299 LQILCRVREDAVTARRCSGASSGMDGPHRSGADGPQVVCYELDEETGRADEPR 457
L + V AV A + S D P R+GAD P + + DEE + D PR
Sbjct: 289 LTTILSVVYSAVRAGSSATVLSAPDSP-RAGADKPLLPFSKADEEAEKKDVPR 340
>01_01_0987 + 7803281-7803910,7803989-7804510
Length = 383
Score = 27.9 bits (59), Expect = 6.0
Identities = 21/62 (33%), Positives = 24/62 (38%)
Frame = +2
Query: 200 GRVDSGRTEESTAPAQLLDLDERYRENANHRRTLQILCRVREDAVTARRCSGASSGMDGP 379
GR D R E++ A A R H TL+ CR A R S G DG
Sbjct: 166 GRDDDARREDTAAAATGSTTPGMSRLRHAHS-TLERHCRSHTPTTKADRTPRTSGGGDGG 224
Query: 380 HR 385
HR
Sbjct: 225 HR 226
>12_02_1101 - 26079214-26080368
Length = 384
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -2
Query: 551 NVVNQLMRGH--LQSAHIRASLL*HDEAVSDSLAVAHQLAQFLHRVR 417
++V +L GH +Q L+ D AV+ SL+ +H L Q+LH R
Sbjct: 287 DLVPRLPPGHRYVQVTEKVVELVVDDAAVAMSLSASHSLEQYLHLFR 333
>04_04_0044 - 22333376-22333898,22335509-22336227
Length = 413
Score = 27.5 bits (58), Expect = 8.0
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +2
Query: 125 ERVGSDVETIRFRGRRRANKGFRGAGRVDSGRTEESTAPAQLLDLD-ERYRENANHRRTL 301
E V ++ + RGR A++ RGA RV E + AP D+D E + N
Sbjct: 147 EAVSPEILALILRGRVDADEVARGAARVCRAWREAAAAPDVWGDVDIEAWCRRVN----- 201
Query: 302 QILCRVREDAVTAR 343
CR R DA R
Sbjct: 202 ---CRPRADAAVRR 212
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,253,995
Number of Sequences: 37544
Number of extensions: 403828
Number of successful extensions: 1388
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1388
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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