Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20102
(471 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0410 + 3661304-3661383,3661494-3661673,3661757-3661870,366... 31 0.47
06_01_0605 + 4373697-4373872,4374840-4374876,4375296-4375399,437... 29 1.4
04_04_0190 - 23442824-23442846,23442891-23442949,23443613-234437... 29 1.4
06_03_0095 - 16575938-16576585,16577028-16577219,16577294-165773... 29 1.9
12_01_0378 - 2946916-2947590 28 3.3
12_01_0677 - 5774633-5774645,5774713-5775062 27 5.8
03_06_0460 - 34098115-34098622,34098981-34099355,34100939-341011... 27 5.8
08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617 27 7.6
03_05_0327 - 23154014-23154942,23155169-23155316,23155606-231566... 27 7.6
03_04_0143 + 17670103-17670430,17670511-17670785,17670897-176713... 27 7.6
03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,235... 27 7.6
01_02_0118 + 11271020-11271293,11272849-11273145,11273226-112734... 27 7.6
>08_01_0410 +
3661304-3661383,3661494-3661673,3661757-3661870,
3661975-3662133,3662193-3662243,3662838-3663018,
3663102-3663228,3663322-3663431,3663529-3663667,
3663767-3663876,3664002-3664071,3664247-3664320,
3664458-3664553,3664682-3664777,3665041-3665168,
3665422-3665656,3665743-3665910,3666274-3666381,
3666468-3666617,3666905-3667015,3667118-3667297,
3667427-3667555,3667819-3667914,3668108-3668293,
3668431-3668603,3668720-3668921
Length = 1150
Score = 31.1 bits (67), Expect = 0.47
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 287 RCPWSPGAKVDGVLHAVHLVVSYQFV 210
RC WSP + GV + H+V +Y FV
Sbjct: 430 RCLWSPDGSILGVAFSKHIVQTYAFV 455
>06_01_0605 +
4373697-4373872,4374840-4374876,4375296-4375399,
4375942-4376137,4376385-4376451,4376895-4376998,
4377090-4377174,4377309-4377369,4377694-4377825,
4377924-4377993,4379261-4379413,4379583-4379694,
4379779-4379920,4380023-4380140,4380862-4380957,
4381061-4381189
Length = 593
Score = 29.5 bits (63), Expect = 1.4
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +3
Query: 186 SEVITNVVNKLIRNN--KMNCMEYAINFGSRAPRTSSGIVSQLSSDLSSPKTRLSLCTS 356
SE I+++ N+L R+ K+ C N S A I S+L S LS+ TRL CTS
Sbjct: 343 SEFISHLANQLARHQFLKIACQLERKNIAS-AYSLLRVIESELQSYLSAVNTRLGHCTS 400
>04_04_0190 -
23442824-23442846,23442891-23442949,23443613-23443737,
23443767-23443901,23444195-23444301,23444488-23444566,
23444856-23444942,23445045-23445281,23445783-23446128,
23446486-23446694
Length = 468
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 311 TQLGNNPGRCPWSPGAKVDGVLHAVHLVVSYQF 213
T G P CP S AKV+ HLV++Y++
Sbjct: 411 TPFGGGPRLCPGSELAKVEAAFFLHHLVLNYRW 443
>06_03_0095 -
16575938-16576585,16577028-16577219,16577294-16577392,
16577496-16577618,16577717-16577929,16578143-16578251,
16578339-16578427,16578604-16578880,16578974-16579084,
16579160-16580508,16581218-16581631
Length = 1207
Score = 29.1 bits (62), Expect = 1.9
Identities = 23/74 (31%), Positives = 35/74 (47%)
Frame = -3
Query: 397 ALNIIAQRQSETVALVHKLNRVFGEDKSELNWETIPDDVLGALEPKLMAYSMQFILLFRI 218
+L +IA S + K + + GE K W PDD +PK A + F LL +
Sbjct: 316 SLLVIALLGSVLFGIWTKEDLMNGEMK---RWYLRPDDSTIFYDPKRAALASFFHLLTAL 372
Query: 217 SLFTTFVMTSLFFS 176
L++ F+ SL+ S
Sbjct: 373 MLYSYFIPISLYIS 386
>12_01_0378 - 2946916-2947590
Length = 224
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +3
Query: 3 GLDAPKMKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYD 143
G+ ++P +++L ASL AA++ VP + ++ +VV D+D
Sbjct: 87 GVHYDAIRPRLLLLLAGGASLGAANATVPGVFHQPRMSTTVVAIDFD 133
>12_01_0677 - 5774633-5774645,5774713-5775062
Length = 120
Score = 27.5 bits (58), Expect = 5.8
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Frame = +2
Query: 155 KEQAFIRGEEERSHHKCREQTDTKQQDELHGVRHQLWLQGSKDIVRDC-FPVEFRLIFAE 331
+EQ RG HH REQ ++Q + + + G D C F E L+ A
Sbjct: 7 REQQMQRGGRHHQHHTTREQEQQQKQQQRRRLMNNATNGGGGDGGSRCYFSTEAILVLAC 66
Query: 332 NAIKLM 349
+ L+
Sbjct: 67 VTVSLL 72
>03_06_0460 -
34098115-34098622,34098981-34099355,34100939-34101156,
34101235-34101297
Length = 387
Score = 27.5 bits (58), Expect = 5.8
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -3
Query: 91 LGTSESAAYRDATKRHRITIAGFIFGAS 8
+G +++A+Y +T R + +AG + GAS
Sbjct: 284 VGAADAASYCGSTSRRMVQVAGEVLGAS 311
>08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617
Length = 988
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +3
Query: 93 DILEEQLYNSVVVADY--DSAVEKSKHLYEEKKSEVITNVVNKLIRNNK 233
DIL E LY S ++DY D ++L + + + N++ + ++NN+
Sbjct: 237 DILSEVLYTSNPMSDYQKDHFWRIKENLNQPLEDHQLINMIKEYLKNNR 285
>03_05_0327 -
23154014-23154942,23155169-23155316,23155606-23156622,
23156753-23157217,23160258-23161247
Length = 1182
Score = 27.1 bits (57), Expect = 7.6
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = +3
Query: 192 VITNVVNKLIRNNKMNCMEYAINF 263
++ + KLI +NK+ C+ +A++F
Sbjct: 894 IVDTITIKLISDNKVGCLNFALSF 917
>03_04_0143 +
17670103-17670430,17670511-17670785,17670897-17671376,
17671454-17671849,17673215-17673289,17673939-17673960,
17674041-17674129,17675204-17675495,17676019-17676087,
17676394-17676572
Length = 734
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +2
Query: 209 EQTDTKQQDELHGVRHQLW-LQGSKD 283
EQ + K QDEL ++ ++W L G K+
Sbjct: 539 EQLNAKDQDELQNIKEKVWKLLGEKE 564
>03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,
2353031-2353708,2353800-2353964,2354139-2354433,
2354581-2354795,2354885-2355190,2355269-2355332,
2355426-2355665,2355783-2355886
Length = 1505
Score = 27.1 bits (57), Expect = 7.6
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +1
Query: 52 SWHLCMLQIPTSLTTFWRSSFTIASSSPITTV 147
+W + +L +P ++ W + IASS +T +
Sbjct: 1080 TWQVLILIVPMAVACMWMQRYYIASSRELTRI 1111
>01_02_0118 +
11271020-11271293,11272849-11273145,11273226-11273439,
11273563-11273672,11273746-11273945,11274439-11274501,
11274560-11274663,11274868-11275055,11275129-11275328,
11275463-11275693
Length = 626
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +2
Query: 248 VRHQLWLQGSKDIVRDCFPVEFRLIFAEN---AIKLMYKR 358
VR+ +W+ G +VRD + + R ++ +N AI Y+R
Sbjct: 399 VRYSIWIDGKLKLVRDPYQLLERFLWRKNVSFAISRHYRR 438
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,212,512
Number of Sequences: 37544
Number of extensions: 203148
Number of successful extensions: 680
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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