BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ceN-0100 (823 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 09_04_0373 - 17037945-17040641 30 2.6 01_05_0547 + 23141299-23141322,23143027-23143230,23143345-23143731 29 5.9 02_01_0451 - 3237849-3238061,3238142-3238268,3238418-3238656,323... 28 7.8 >09_04_0373 - 17037945-17040641 Length = 898 Score = 29.9 bits (64), Expect = 2.6 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = -2 Query: 150 CTNVNLFSPIRVFKLMKIYNFCAIRTRLLLIFTTFN 43 CT + + IR L+++ FCA +R LL++ N Sbjct: 582 CTEITIIGNIRHVNLVRLRGFCAEGSRRLLVYEYMN 617 >01_05_0547 + 23141299-23141322,23143027-23143230,23143345-23143731 Length = 204 Score = 28.7 bits (61), Expect = 5.9 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Frame = -3 Query: 524 KYAQQCSAGLSKRGARSRLLNYTNNNVDCVNLTNKYIILT-T*IEPSKFCYTS--TLCRV 354 K A++ S +K RL TN++ ++L N+Y+ LT + I KFC S T Sbjct: 34 KLAKKQSFKDNKSDFFKRLAKMTNDHFIPLDLNNQYVPLTNSKIVDEKFCLASQFTCSGA 93 Query: 353 RVLAYVRLFVEL 318 R++ + LF L Sbjct: 94 RLIGHDGLFTSL 105 >02_01_0451 - 3237849-3238061,3238142-3238268,3238418-3238656, 3238937-3239151,3239569-3240031,3240562-3240715, 3241724-3241833,3242540-3242797,3242843-3242854, 3243492-3243545,3244202-3244312,3244390-3244545, 3244798-3245201,3245405-3245501,3246041-3246050, 3246097-3246164,3246652-3246762,3246874-3247074, 3247384-3247485,3247980-3248087,3248209-3248411, 3248563-3248680,3248774-3248854,3248958-3249500, 3249602-3249730 Length = 1428 Score = 28.3 bits (60), Expect = 7.8 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Frame = -2 Query: 210 APVRAGPVAIATHATSLI-RHCTNVNLFSPIRVFKLMKIYNFC 85 A AG +A +A +L +HCT +PI+ K +FC Sbjct: 409 AHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFC 451 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,496,623 Number of Sequences: 37544 Number of extensions: 287216 Number of successful extensions: 443 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 437 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 443 length of database: 14,793,348 effective HSP length: 81 effective length of database: 11,752,284 effective search space used: 2256438528 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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