Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0056
         (614 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622...    28   6.8  
08_01_0917 + 9033451-9036136,9036373-9036722                           27   8.9  
04_04_0543 - 26112461-26112667                                         27   8.9  
04_01_0083 + 904473-905167,905247-905347,905902-905994,907322-90...    27   8.9  

>03_05_1065 + 30061588-30061883,30061995-30062056,30062196-30062276,
            30062391-30062464,30062547-30062629,30063044-30063147,
            30063526-30063665,30063736-30063783,30063939-30063991,
            30064178-30064262,30064346-30064412,30064496-30064606,
            30065262-30065283,30066244-30071110,30071186-30071374,
            30071463-30071577,30072329-30073388,30074247-30074694,
            30074966-30075019,30075105-30076898,30076989-30077949,
            30078271-30078384,30078459-30078613,30078934-30079026,
            30079341-30079613,30093423-30093975,30094465-30094540,
            30094619-30094718
          Length = 4025

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 42   CRSTNEALAETWSQKNQKLS 101
            CR+  E L ETWSQK+  +S
Sbjct: 3165 CRAQLEQLQETWSQKDMTIS 3184


>08_01_0917 + 9033451-9036136,9036373-9036722
          Length = 1011

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +1

Query: 127 YQYAMTSLY*CYIRFTYTLNNSFGYLTFINSQRVS 231
           ++  +TSL   Y  FT TL +  G+LT INS  VS
Sbjct: 394 WKLKLTSLNLSYNLFTGTLPHDIGWLTRINSIYVS 428


>04_04_0543 - 26112461-26112667
          Length = 68

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 467 CVCVCVCLFHNYSNSHIFDY 408
           C C C+C+   Y + H F++
Sbjct: 39  CDCTCLCMMTEYQDRHSFEF 58


>04_01_0083 +
           904473-905167,905247-905347,905902-905994,907322-907968
          Length = 511

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 15  PTSPARGAPCRSTNEALAETWSQKNQKLSPQVRSTATLPVRD 140
           PT+P+RGAP  S    ++ +W Q    LS +  +TA   V D
Sbjct: 96  PTTPSRGAPSASA-APVSSSWEQLKSLLSCR-SATAAARVHD 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,230,403
Number of Sequences: 37544
Number of extensions: 203436
Number of successful extensions: 514
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)