Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10c04
         (634 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0101 - 738305-738556,738723-738977,739306-739554,739649-73...    33   0.14 
04_01_0322 - 4298733-4299524                                           32   0.44 
05_07_0131 + 27898028-27898042,27898159-27898274,27898361-278984...    29   3.1  
02_02_0046 + 6340556-6340589,6343022-6343131,6343208-6343307,634...    29   4.1  
01_06_0180 - 27260099-27260440,27261236-27261350,27261403-272615...    28   7.1  
02_01_0046 - 311752-312138,312220-312372,312458-312653,312702-31...    27   9.4  

>11_01_0101 -
           738305-738556,738723-738977,739306-739554,739649-739843,
           739953-740060,740184-740405,740806-741390,741495-741863,
           742423-742529,742755-742883,743027-743084,743166-743248,
           744115-744196,744274-744350,744477-744560,744649-744718,
           744796-744884,744965-745654,746127-746439
          Length = 1338

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +1

Query: 331 KYQISWTEEPA-KARSGVHQINILDEEGWASLRRARRADPAASVAPLLAIQLSHPGSYS 504
           KY+I +    A K +SG+  IN L +  + S+RR RR    A +AP L   ++ P  ++
Sbjct: 590 KYRIRFCLVLAEKEKSGIPNINWLRDRLFRSIRRRRRRGALAPLAPTLTTAIAMPSCFT 648


>04_01_0322 - 4298733-4299524
          Length = 263

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
 Frame = +1

Query: 115 ITIALIGSICAESCQNPKVEAS--YFTSLDATVVTQIAYITEFTLKCDNTLPENYGLYAE 288
           I + +  S+C  + ++P++ A   Y+T  D   + + +   +F   C N  P N G Y+ 
Sbjct: 181 ILVGVNSSLCVSTAKHPEINAGCVYYTDDD---MWEASMRRDFW--CSNRKP-NVGAYSL 234

Query: 289 VDGKSLTAARIGENKYQISW 348
            DGK+++   +GE+   +SW
Sbjct: 235 KDGKAMSIPGLGEH---LSW 251


>05_07_0131 +
           27898028-27898042,27898159-27898274,27898361-27898424,
           27899450-27899791
          Length = 178

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 120 CDNINKTFCDHFVICDLKGKSNFKNLRLQFSLLYSRPR 7
           C  I KT   HF +C       F N  ++F L+Y + R
Sbjct: 122 CIQIIKTATVHFKLCKRDNTKQFHNSNIKFPLVYRKVR 159


>02_02_0046 +
           6340556-6340589,6343022-6343131,6343208-6343307,
           6343392-6343477,6343846-6344124,6346337-6346435,
           6346803-6346826
          Length = 243

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/65 (27%), Positives = 25/65 (38%)
 Frame = -2

Query: 552 QD*DECCQYLGVHPWPGVAARMTKLYGE*WSNRGGRIGTSSTTQRSPAFFI*NVYLVHSG 373
           +D  +CC + G H   G    +T       S    + G +  TQR   FF  N   +  G
Sbjct: 174 RDDHDCCSHSGAHALQGSECELTTWSATKQSIFEDKPGKNCCTQRGAEFFYTNSQ-IGQG 232

Query: 372 ASLRW 358
           A   W
Sbjct: 233 AEAEW 237


>01_06_0180 -
           27260099-27260440,27261236-27261350,27261403-27261518,
           27261594-27261608
          Length = 195

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 120 CDNINKTFCDHFVICDLKGKSNFKNLRLQFSLLYSRPR 7
           C  I KT   HF +C       F N  ++F L+Y + R
Sbjct: 139 CIQIIKTATVHFKLCKRDNTKQFHNGSIKFPLVYRKVR 176


>02_01_0046 -
           311752-312138,312220-312372,312458-312653,312702-312792,
           312808-313228
          Length = 415

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
 Frame = +2

Query: 230 PNLRLNVTILCPRTT----VCTLKS-MENH*RPPESVKTNI 337
           PNL LN   LCPRT+     C + S + NH    + +K N+
Sbjct: 24  PNLSLNFKTLCPRTSRGNFKCKIDSILRNHLGTAKILKLNV 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,729,279
Number of Sequences: 37544
Number of extensions: 281872
Number of successful extensions: 714
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)