Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10b15
(623 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0763 - 24405525-24405701,24406209-24406368,24406924-244070... 133 1e-31
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 56 2e-08
01_06_0553 + 30173964-30174349,30175124-30175439,30175523-301756... 32 0.43
12_02_0699 + 22245933-22246213,22246493-22246575,22246844-222471... 31 0.74
02_02_0467 - 10620976-10621299 30 1.7
02_04_0440 + 22954950-22955213,22955317-22956621,22956791-22957522 29 4.0
02_05_0181 - 26522849-26522932,26523053-26523184,26523263-265233... 28 5.2
07_03_0352 + 17089666-17089982,17090326-17090410,17090674-17090913 28 6.9
12_01_0488 + 3866852-3866911,3867473-3867745,3868397-3868528,386... 27 9.2
>06_03_0763 -
24405525-24405701,24406209-24406368,24406924-24407005,
24407098-24407167,24407443-24407607,24407731-24407874,
24408467-24408715,24409006-24409221,24409306-24409398
Length = 451
Score = 133 bits (321), Expect = 1e-31
Identities = 64/126 (50%), Positives = 92/126 (73%)
Frame = +1
Query: 244 RMPNIKVFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCVEIGESVRGEDVYIVQSG 423
R +K+FSG+++ LAQ+I LG+DLGKV+ K+F++ E V++ ESVRG DV++VQ
Sbjct: 86 RDSRLKIFSGTANRPLAQEIASYLGVDLGKVLIKRFADGEIYVQLQESVRGCDVFLVQPT 145
Query: 424 SGEINDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPITAKLVANILSVS 603
+N+NLMEL +MI+AC+ ASA +T VIP F YAR D+K + R ITAKL AN+L+ +
Sbjct: 146 CSPVNENLMELFVMIDACRRASARSITVVIPYFGYARADRKAQGREAITAKLSANLLTEA 205
Query: 604 GADHII 621
G+D +I
Sbjct: 206 GSDRVI 211
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 56.0 bits (129), Expect = 2e-08
Identities = 31/66 (46%), Positives = 42/66 (63%)
Frame = +1
Query: 424 SGEINDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPITAKLVANILSVS 603
S EI L L IN + ASA +TAVIP F YAR D+K + R I AKLVAN+++ +
Sbjct: 110 SQEIASYLGLELGKINIKRRASAKNITAVIPYFGYARADRKSQGRESIAAKLVANMITEA 169
Query: 604 GADHII 621
GA+ ++
Sbjct: 170 GANRVL 175
Score = 36.7 bits (81), Expect = 0.015
Identities = 13/31 (41%), Positives = 25/31 (80%)
Frame = +1
Query: 256 IKVFSGSSHPDLAQKIVDRLGIDLGKVVTKK 348
+++FSG+++P L+Q+I LG++LGK+ K+
Sbjct: 98 LRIFSGTANPSLSQEIASYLGLELGKINIKR 128
>01_06_0553 +
30173964-30174349,30175124-30175439,30175523-30175618,
30175710-30175778,30175878-30176006,30176165-30176264,
30177321-30177454
Length = 409
Score = 31.9 bits (69), Expect = 0.43
Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 6/154 (3%)
Frame = +1
Query: 154 ATTSGLVSMKSTITLEDVVNKLDHVLPLTTRM---PNIKVFSGSSHPDLAQKIVDRLG-I 321
AT S +VS S I L V V +T + N+ +F +LA+++V R I
Sbjct: 62 ATGSSIVSNASGIHLAAPVLAPLAVPKMTGAVGAHKNVLLFHCEEMRELAEQVVARNDDI 121
Query: 322 DLGKVVTKKFSN--METCVEIGESVRGEDVYIVQSGSGEINDNLMELLIMINACKIASAS 495
+L + + F++ + ++RG+ V + S S + E L +I A S
Sbjct: 122 ELRSISWRTFADGFPNLFISNAHTIRGQHVAFLASFSSP--SVIFEQLSIIYALPKLFIS 179
Query: 496 RVTAVIPCFPYARQDKKDKSRAPITAKLVANILS 597
T ++P FP ++ + TA +A ILS
Sbjct: 180 SFTLILPFFPTGTSERMEDEGDVATAFTLARILS 213
>12_02_0699 +
22245933-22246213,22246493-22246575,22246844-22247125,
22248725-22248986,22250146-22251781,22251910-22252416
Length = 1016
Score = 31.1 bits (67), Expect = 0.74
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 555 QSPDHGQTRCQHPFSVWSRSH 617
Q PDH TRC++ VW R H
Sbjct: 12 QKPDHPPTRCRYQAKVWFRRH 32
>02_02_0467 - 10620976-10621299
Length = 107
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 555 QSPDHGQTRCQHPFSVWSRSH 617
Q PDH TRC+ VW R H
Sbjct: 12 QKPDHPPTRCRSQAKVWFRRH 32
>02_04_0440 + 22954950-22955213,22955317-22956621,22956791-22957522
Length = 766
Score = 28.7 bits (61), Expect = 4.0
Identities = 28/85 (32%), Positives = 40/85 (47%)
Frame = +1
Query: 70 VALRTLIDKWTRQFK*FISVLSLRIAPLATTSGLVSMKSTITLEDVVNKLDHVLPLTTRM 249
+ L + K + K I+ L R P + L S + T+TL+DV L LP+ R
Sbjct: 117 LGLSQICQKMPQLDKALITALVERWRPETHSFHLASGEMTVTLQDVSMLL--ALPIDGR- 173
Query: 250 PNIKVFSGSSHPDLAQKIVDRLGID 324
V S + H D AQ ++D LG D
Sbjct: 174 ---PVCSTTDH-DYAQMVIDCLGHD 194
>02_05_0181 -
26522849-26522932,26523053-26523184,26523263-26523329,
26523800-26524186,26524259-26524360,26524983-26525132,
26525552-26525636,26525743-26525769,26525858-26526116,
26526659-26526751,26526921-26527013,26527122-26527289,
26527436-26527594,26528214-26528273,26528392-26528487
Length = 653
Score = 28.3 bits (60), Expect = 5.2
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +3
Query: 534 ARQKRQEQSPDHGQTRCQHPFSVWSR 611
+ Q ++++PD +T C+ P VWS+
Sbjct: 487 SEQNSEDENPDSSRTACETPKWVWSK 512
>07_03_0352 + 17089666-17089982,17090326-17090410,17090674-17090913
Length = 213
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +3
Query: 519 LPVRAARQKRQEQSPDHGQTRCQHPFSVWSRSH 617
LP + Q PDH RC+ VW R H
Sbjct: 12 LPKNLITRLGTPQKPDHPPIRCRSQAKVWFRRH 44
>12_01_0488 +
3866852-3866911,3867473-3867745,3868397-3868528,
3868910-3868942
Length = 165
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 142 IAPLATTSGLVSMKSTITLEDVVNKLDHVLPLTT 243
+AP TTS S K +T +V + LD V P T
Sbjct: 7 VAPSTTTSSSASFKLPLTAGNVESVLDQVRPYLT 40
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,956,664
Number of Sequences: 37544
Number of extensions: 301349
Number of successful extensions: 757
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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