Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10a20
(689 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0616 - 9874882-9874974,9875067-9875189,9875284-9875379,987... 105 3e-23
11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845 29 2.6
01_06_1600 + 38552396-38552600,38552906-38552928 29 2.6
03_02_0663 + 10256898-10258915,10259162-10259248,10259463-102597... 29 3.5
05_03_0572 - 15617618-15617701,15617842-15618012,15618117-156182... 29 4.6
11_01_0482 - 3714442-3715593 28 6.1
06_02_0172 + 12594542-12596083 28 6.1
02_05_0948 - 33003921-33006269 28 6.1
11_01_0113 + 881806-881996,882831-882921,883140-883255,884489-88... 28 8.0
02_05_0197 - 26641356-26642188,26642312-26642398,26643373-266434... 28 8.0
01_05_0420 + 21969797-21970939,21971307-21971369,21971488-219716... 28 8.0
>03_02_0616 -
9874882-9874974,9875067-9875189,9875284-9875379,
9875457-9875666,9875718-9875812,9876032-9876123,
9876539-9876660
Length = 276
Score = 105 bits (253), Expect = 3e-23
Identities = 78/202 (38%), Positives = 107/202 (52%), Gaps = 23/202 (11%)
Frame = +2
Query: 152 EVSKNETGGGEGIEVIKNEPFKDYPLLGGKYSSGQYTYKIYHLASKVPAFIRLLAPKGSL 331
++ + T EG+EV++ PF+D L GK GQYT K YHL SK+P++++ AP +L
Sbjct: 2 KMEQQNTNSKEGVEVLQQVPFEDEKL--GK---GQYTSKNYHLQSKIPSWMKGFAPASAL 56
Query: 332 EVHEEAWNAYPYCRTVLTNPGYMKENFVIC---IESLHLPDAG----------DQYNV-- 466
VHEE+W AYP RT Y F C I+++ PD G ++NV
Sbjct: 57 TVHEESWCAYPNSRTGFLIICYQCPLFSKCSLTIDTVIRPDNGCSENTKRQILREHNVHN 116
Query: 467 --HELPPEKLKTREVVPIDIANDPLPSADYKSE------TDPTKFKSTKTGRGPLVGPNW 622
H L E+L REV +DIA L S DY S+ D T F+S +T RGPL+ W
Sbjct: 117 QAHNLTSEQLAAREVEVVDIA---LQSRDYWSKVISAPNVDLTAFRSQRTSRGPLL-KGW 172
Query: 623 KNDVKPVMTCYKLVTAEFKWFG 688
+ +PVMT YKLV + +G
Sbjct: 173 MDSCRPVMTTYKLVIMDAPIWG 194
>11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845
Length = 958
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -1
Query: 404 LSCNRDSSALFYSTGRRSTLLRVLREILSEQ 312
+ C D S + ++TG STLL L E+L EQ
Sbjct: 1 MPCLSDPSGMEFATGVMSTLLSKLAELLKEQ 31
>01_06_1600 + 38552396-38552600,38552906-38552928
Length = 75
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = -1
Query: 554 ICSRPTGGGRSQCLWGPPRGSLVSQAAARGHC---IGRRR 444
+C +GGGR W P +G ++ AA C +G+ R
Sbjct: 21 LCEAGSGGGRGGGRWRPAKGDAMAMMAAERSCARAVGKER 60
>03_02_0663 +
10256898-10258915,10259162-10259248,10259463-10259724,
10259802-10260111,10260535-10260645,10260861-10261090
Length = 1005
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 457 IQCPRAAA*ETKDPRGGPHRHCERPPP 537
++CPRAA + P P C RPPP
Sbjct: 192 LECPRAAVFAGESPGVDPICPCRRPPP 218
>05_03_0572 -
15617618-15617701,15617842-15618012,15618117-15618245,
15619065-15619142
Length = 153
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 520 CERPPPVGRLQIGDRPDQVQVYEDRPRTARRAK-LEERRETGHDVLQAR 663
CE P PV R+Q+ D+ + V+ D+ + L+ E G V++AR
Sbjct: 63 CEEPSPVVRVQVLDKGFLINVFMDKSSPGLLSSILQAFDELGLTVIEAR 111
>11_01_0482 - 3714442-3715593
Length = 383
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 454 PIQCPRAAA*ETKDPRGGPHRHC 522
P++ P A E D RGG RHC
Sbjct: 285 PVEAPAGAFDEEHDRRGGNRRHC 307
>06_02_0172 + 12594542-12596083
Length = 513
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 275 HLASKVPAFIRLLAPKGSLEVHEEAWNAYPYCRTVL 382
H+ K+ A +R + PKG V EE PY + V+
Sbjct: 333 HVMGKLQAEVRRVMPKGQDIVTEEQLGCMPYLKAVI 368
>02_05_0948 - 33003921-33006269
Length = 782
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = -3
Query: 537 GRGSFAMSMGTTSRVFSFSGGSSWTLYWSPASGKCSDSIHITKFSF 400
GRGSFA + G SFSGG T ++ AS C++ + KF +
Sbjct: 155 GRGSFAPTDGLGPPPASFSGGCVSTASFN-ASAYCNNKLIGAKFFY 199
>11_01_0113 +
881806-881996,882831-882921,883140-883255,884489-885260
Length = 389
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -1
Query: 527 RSQCLWGPPRGS-LVSQAAARGHCIGRRRP 441
RS C W +G +V A+ G+C G RRP
Sbjct: 44 RSPCPWSVEKGEEVVLVHASMGNCFGGRRP 73
>02_05_0197 - 26641356-26642188,26642312-26642398,26643373-26643452,
26643948-26644120,26644227-26644308,26644623-26644758,
26644777-26644833,26644905-26645120,26645939-26646335,
26646458-26646544,26647063-26647324,26648892-26648972,
26649176-26650350
Length = 1221
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +1
Query: 502 GGPHRHCER-PPPVGRLQIGDRPDQVQVYEDRPRTARRAKLEERRETGHDVLQA 660
G H++ R PP G IG+R Q Q P + + + + H+ LQA
Sbjct: 1134 GAQHQNLPRFPPQQGGGNIGERQGQGQFRPGTPSYVQEQRPPPQSSSSHEALQA 1187
>01_05_0420 +
21969797-21970939,21971307-21971369,21971488-21971616,
21972241-21972291,21972669-21972809,21972922-21973122,
21973201-21973419,21973582-21973700,21973772-21973862,
21975864-21975965,21976291-21976315,21976522-21976592
Length = 784
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 490 KDPRGGPHRHCERPPPVGRLQIG 558
K+P GGPH++ RP P ++G
Sbjct: 585 KNPTGGPHQNFGRPQPADGKKLG 607
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,363,480
Number of Sequences: 37544
Number of extensions: 446743
Number of successful extensions: 1331
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1327
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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