Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10d23
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0295 + 2217496-2218092,2218774-2218876,2219140-2219249,221...    32   0.40 
02_02_0028 + 6196453-6196512,6196936-6197320,6197843-6197925,619...    30   2.1  
02_01_0405 - 2952434-2955583                                           29   2.8  
03_05_1070 + 30125131-30127029                                         28   6.5  
02_01_0406 - 2958933-2962076                                           28   6.5  
02_01_0243 - 1601977-1602834,1602857-1603063                           28   6.5  
01_01_0453 - 3361460-3361549,3361660-3361846,3362038-3362139,336...    28   6.5  
01_07_0238 + 42209407-42209964,42210039-42210561,42212577-422126...    28   8.6  

>11_01_0295 +
           2217496-2218092,2218774-2218876,2219140-2219249,
           2219328-2219399,2219653-2219814,2220300-2220510,
           2220613-2220948,2221050-2221162
          Length = 567

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 610 PADLHDAVPGYSGAHASPPSTETVAAGGKNKCAWRSVQE 494
           PADL D + G  G+H  P ST+    G +   A  + +E
Sbjct: 121 PADLKDLIAGLYGSHPQPSSTDAAEVGTQEGSAVAAAEE 159


>02_02_0028 +
           6196453-6196512,6196936-6197320,6197843-6197925,
           6198060-6198183,6198404-6198523,6198595-6198755,
           6198999-6199157,6199272-6199434,6199604-6199729,
           6199775-6199900,6200400-6200764,6201204-6201404,
           6201685-6201794,6201919-6202003,6202553-6202681,
           6202763-6202868,6202984-6203072,6203172-6203474
          Length = 964

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +3

Query: 519 LFLPPAATVSVEGGD--ACAPEYPGTASCKSAGVCSSA 626
           L +PP    +V  GD  + A + P  ASC++AG C++A
Sbjct: 99  LQIPPPERRAVGDGDLLSSAGDLPDAASCRAAGSCAAA 136


>02_01_0405 - 2952434-2955583
          Length = 1049

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 24/80 (30%), Positives = 35/80 (43%)
 Frame = +3

Query: 411 CLEHNYTREIVRLMTTLPVPSNRNTLSHSCTERHAHLFLPPAATVSVEGGDACAPEYPGT 590
           C +H+    I  L   L +  N  +L+ SCTE+     L     +S +GG A A    GT
Sbjct: 8   CKKHSNKFPIPVLALALVLLINLASLTSSCTEQDRSSLLRFLRELSQDGGLA-ASWQDGT 66

Query: 591 ASCKSAGVCSSAGQQMDGVT 650
             CK  G+  S    +  V+
Sbjct: 67  DCCKWDGITCSQDSTVTDVS 86


>03_05_1070 + 30125131-30127029
          Length = 632

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -2

Query: 538 AAGGKNKCAWRSVQECDS-VLRLD 470
           A GG+ + AWRS    DS VLRLD
Sbjct: 521 AGGGRGEAAWRSTATQDSQVLRLD 544


>02_01_0406 - 2958933-2962076
          Length = 1047

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = +3

Query: 417 EHNYTREIVRLMTTLPVPSNRNTLSHSCTERHAHLFLPPAATVSVEGGDACAPEYPGTAS 596
           +H+    I  L   L +  N  +L+ SCTE+     L     +S +GG   A    GT  
Sbjct: 8   KHSNKFPIPVLALALVLLINLASLTSSCTEQDRSSLLKFIRELSQDGG-LSASWQDGTDC 66

Query: 597 CKSAGV-CSSAGQQMD 641
           CK  G+ CS  G   D
Sbjct: 67  CKWDGIACSQDGTVTD 82


>02_01_0243 - 1601977-1602834,1602857-1603063
          Length = 354

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
 Frame = +3

Query: 495 SCTERHAHLFLPPA-ATVSVEG---GDAC--APEYPGTASCKSAGVCSSAGQQMDGVTNR 656
           S +  ++++F P A AT  V G   G  C  A   P TASC S+G  ++A         R
Sbjct: 59  SSSSPYSYVFTPSATATTRVAGYCCGATCASASAAPATASCCSSGTRAAAATAACSSATR 118

Query: 657 IIGALQVLSKL*QWRRL 707
             G+  +  +   W+RL
Sbjct: 119 RRGSWSICRR---WKRL 132


>01_01_0453 -
           3361460-3361549,3361660-3361846,3362038-3362139,
           3362239-3362306,3362976-3363175,3363253-3363595,
           3363837-3363893,3364011-3364727,3364805-3365007,
           3365171-3365297
          Length = 697

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 414 LEHNYTREIVRLMTTLPVPSNRNTLS 491
           L+H  TR+++ L    PV +N+N LS
Sbjct: 147 LDHRQTRDLISLFLPAPVRANQNKLS 172


>01_07_0238 +
           42209407-42209964,42210039-42210561,42212577-42212665,
           42212981-42213191,42213265-42213446,42213573-42213812,
           42214691-42214878,42215230-42215323,42215407-42215463,
           42215552-42215686,42216460-42216525,42216745-42216858,
           42217849-42218010,42218093-42218221,42218323-42218424,
           42219428-42219504,42219600-42219957
          Length = 1094

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +3

Query: 357 KTIHLRRRMSPGIVPWNRCLEHNYTREIVRLMTTL 461
           K + L+  +  GI+PW+   +H++  ++V +M  L
Sbjct: 890 KLLELQADIMSGILPWSSVTKHHFKGKVVLIMEIL 924


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,405,306
Number of Sequences: 37544
Number of extensions: 404591
Number of successful extensions: 1300
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)