Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10c18
(259 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0370 + 15030829-15030837,15031579-15031957,15033434-150336... 29 0.39
04_03_0381 - 15163425-15164903 28 1.2
04_03_0380 - 15150814-15152304 28 1.2
04_03_0369 + 15012906-15014417 28 1.2
04_03_0348 + 14735581-14737071 28 1.2
04_03_0347 + 14723118-14724548 28 1.2
04_03_0323 - 14364145-14365656 28 1.2
08_02_0607 + 19285580-19286138,19286734-19287668 27 2.7
04_03_0354 + 14830325-14830826,14831491-14832416 27 2.7
04_03_0353 - 14785648-14787213 27 2.7
02_04_0351 + 22249117-22249624,22249710-22250674 26 3.6
12_01_1001 - 10145663-10147006 25 6.3
12_01_0997 - 10114571-10114864,10115422-10115795,10115910-10116144 25 6.3
08_02_1402 - 26786011-26786128,26786263-26786516,26787505-267877... 25 6.3
>04_03_0370 +
15030829-15030837,15031579-15031957,15033434-15033626,
15033859-15034102,15035383-15035445
Length = 295
Score = 29.5 bits (63), Expect = 0.39
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 101 VPLSDAITFAEQKLNCKYKKIEF 169
VP+ + FAEQ+ NC+YK+ E+
Sbjct: 32 VPMLSWLFFAEQQTNCRYKQTEW 54
>04_03_0381 - 15163425-15164903
Length = 492
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 101 VPLSDAITFAEQKLNCKYKKIEF 169
VP+ FAEQ+ NC+YK+ E+
Sbjct: 392 VPMLSWPFFAEQQTNCRYKRTEW 414
>04_03_0380 - 15150814-15152304
Length = 496
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 101 VPLSDAITFAEQKLNCKYKKIEF 169
VP+ FAEQ+ NC+YK+ E+
Sbjct: 398 VPMLSWPFFAEQQTNCRYKRTEW 420
>04_03_0369 + 15012906-15014417
Length = 503
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 101 VPLSDAITFAEQKLNCKYKKIEF 169
VP+ FAEQ+ NC+YK+ E+
Sbjct: 402 VPMLSWPFFAEQQTNCRYKRTEW 424
>04_03_0348 + 14735581-14737071
Length = 496
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 101 VPLSDAITFAEQKLNCKYKKIEF 169
VP+ FAEQ+ NC+YK+ E+
Sbjct: 398 VPMLSWPFFAEQQTNCRYKRTEW 420
>04_03_0347 + 14723118-14724548
Length = 476
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 101 VPLSDAITFAEQKLNCKYKKIEF 169
VP+ FAEQ+ NC+YK+ E+
Sbjct: 376 VPMLSWPFFAEQQTNCRYKRTEW 398
>04_03_0323 - 14364145-14365656
Length = 503
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 101 VPLSDAITFAEQKLNCKYKKIEF 169
VP+ FAEQ+ NC+YK+ E+
Sbjct: 402 VPMLSWPFFAEQQTNCRYKRTEW 424
>08_02_0607 + 19285580-19286138,19286734-19287668
Length = 497
Score = 26.6 bits (56), Expect = 2.7
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +2
Query: 125 FAEQKLNCKYKKIEF 169
FAEQ+ NC+YK+ E+
Sbjct: 417 FAEQQTNCRYKRTEW 431
>04_03_0354 + 14830325-14830826,14831491-14832416
Length = 475
Score = 26.6 bits (56), Expect = 2.7
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +2
Query: 125 FAEQKLNCKYKKIEF 169
FAEQ+ NC+YK+ E+
Sbjct: 395 FAEQQTNCRYKRTEW 409
>04_03_0353 - 14785648-14787213
Length = 521
Score = 26.6 bits (56), Expect = 2.7
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +2
Query: 125 FAEQKLNCKYKKIEF 169
FAEQ+ NC+YK+ E+
Sbjct: 441 FAEQQTNCRYKRTEW 455
>02_04_0351 + 22249117-22249624,22249710-22250674
Length = 490
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +2
Query: 125 FAEQKLNCKYKKIEF 169
FAEQ+ NC+YK +E+
Sbjct: 405 FAEQQTNCRYKCVEW 419
>12_01_1001 - 10145663-10147006
Length = 447
Score = 25.4 bits (53), Expect = 6.3
Identities = 8/38 (21%), Positives = 21/38 (55%)
Frame = +2
Query: 107 LSDAITFAEQKLNCKYKKIEFN*LYIYFEFN*LYISFE 220
+S + + K+NC KK+ + +Y+++ + + F+
Sbjct: 219 MSSTTVYVDTKINCNNKKVAYGSGIMYWDYQEIVLWFD 256
>12_01_0997 - 10114571-10114864,10115422-10115795,10115910-10116144
Length = 300
Score = 25.4 bits (53), Expect = 6.3
Identities = 8/38 (21%), Positives = 21/38 (55%)
Frame = +2
Query: 107 LSDAITFAEQKLNCKYKKIEFN*LYIYFEFN*LYISFE 220
+S + + K+NC KK+ + +Y+++ + + F+
Sbjct: 130 MSSTTVYVDTKINCNNKKVAYGSGIMYWDYQEIVLWFD 167
>08_02_1402 -
26786011-26786128,26786263-26786516,26787505-26787732,
26788920-26789759
Length = 479
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -2
Query: 147 QFSFCSANVIASDNGTRPCNIKANN 73
+ SFC V+ + RPC IK ++
Sbjct: 404 EISFCDQTVVPTGADQRPCTIKIDS 428
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,219,760
Number of Sequences: 37544
Number of extensions: 53338
Number of successful extensions: 116
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 14,793,348
effective HSP length: 64
effective length of database: 12,390,532
effective search space used: 260201172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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