Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10c08
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0816 + 7935399-7936286,7936842-7936997,7937124-7937335,793...    30   1.6  

>08_01_0816 +
           7935399-7936286,7936842-7936997,7937124-7937335,
           7937473-7937665
          Length = 482

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +2

Query: 110 WLYQLMFRLLMKLGTDILGSVQSKIMKTLDVIHECFPAELQLHNI 244
           W+  L+F +    G  ILG+V + I+  + V+  CF A L + NI
Sbjct: 220 WMVILLFLMGFIAGGFILGAVHNPILLVVVVVIFCFVAALVIWNI 264


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,102,098
Number of Sequences: 37544
Number of extensions: 131181
Number of successful extensions: 463
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)