Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10c06
(728 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1651 - 28395369-28395436,28395524-28395575,28395857-283960... 283 8e-77
03_02_0189 - 6253659-6255380 32 0.54
09_06_0132 - 21042653-21042873,21042950-21043027,21043106-210431... 31 0.94
04_04_1253 + 32097840-32097963,32098154-32098329,32098413-320986... 30 1.6
05_06_0142 + 25968828-25969157,25969283-25969447,25969564-25969884 29 3.8
11_05_0069 - 18814789-18815326,18815742-18816001,18816077-188166... 29 5.0
02_05_0492 - 29476883-29476949,29477030-29477166,29477292-294773... 29 5.0
01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855 29 5.0
08_02_0580 - 18953208-18953513,18953668-18953868,18953929-189540... 28 8.7
02_05_0064 - 25529630-25531440,25531663-25531673,25533113-255331... 28 8.7
>07_03_1651 - 28395369-28395436,28395524-28395575,28395857-28396092,
28396362-28396419,28396509-28396577,28396686-28396791,
28397104-28397171,28397266-28397385,28398144-28398231,
28399433-28399534,28399699-28399757,28399866-28400003,
28400222-28400473,28400508-28400593,28401061-28401165,
28402351-28402516
Length = 590
Score = 283 bits (695), Expect = 8e-77
Identities = 137/224 (61%), Positives = 159/224 (70%)
Frame = +2
Query: 56 PQNEYIERHQKLYGRRLDYXXXXXXXXXXXXXXXXXXXXXLRGIKAKIFNKERRNEKIQM 235
PQ ++IE HQK +GRRLDY L G K K F K+R EK QM
Sbjct: 333 PQGDHIELHQKRHGRRLDYEERKRKRAAREVHKRSRDARQLLGAKGKRFAKKRYAEKAQM 392
Query: 236 KKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIP 415
KK +K H+E + + V EGALP YLLDRD RAKVLSN IKQKR EKAGKW+VP+P
Sbjct: 393 KKTLKMHDESTSRQKVDDVQEGALPPYLLDRDQTQRAKVLSNTIKQKRMEKAGKWEVPLP 452
Query: 416 KVRAQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRKPPKFERFIRPMALRFKKAH 595
KVR A+ E+FKVL++GK K K WKRMVTK TFVG FTRKPPK+ERFIRP LRF KAH
Sbjct: 453 KVRPVAEEEMFKVLRTGKRKTKQWKRMVTKATFVGPGFTRKPPKYERFIRPTGLRFTKAH 512
Query: 596 VTHPELKATFCLPIIGVKKNPSSQMYTSLGVITKGTVIEVNISE 727
VTHPELK TF L II VKKNP+ QMY++LGV+T+GT+IEVN+SE
Sbjct: 513 VTHPELKCTFNLDIISVKKNPNGQMYSTLGVLTRGTIIEVNVSE 556
>03_02_0189 - 6253659-6255380
Length = 573
Score = 31.9 bits (69), Expect = 0.54
Identities = 33/113 (29%), Positives = 44/113 (38%), Gaps = 4/113 (3%)
Frame = +2
Query: 359 NMIKQKRKEKAGKWDVPIPKVRAQADAEVFKV--LKSGKSKRKAWKRMVTKVTFVGENFT 532
N ++ +KEKA + P P RA A KV S +K K V K T +
Sbjct: 68 NKVEYGKKEKATRIGGPKPSSRASALKVKPKVSSFNSKPAKSTLPKSAVVKKTLKIDESL 127
Query: 533 RKPPKFERFIRPMAL--RFKKAHVTHPELKATFCLPIIGVKKNPSSQMYTSLG 685
FE P L R K ++ P + +PII K + Q YT G
Sbjct: 128 FSAKSFEELGLPPLLIDRLNKEGLSTPTEVQSAAIPIISQKHDAVIQSYTGSG 180
>09_06_0132 -
21042653-21042873,21042950-21043027,21043106-21043167,
21043504-21043578,21043664-21043752,21043825-21043905,
21044939-21045076,21046299-21046429,21046521-21046592,
21047218-21047275,21047362-21047461,21047544-21047617,
21047701-21047836,21047913-21048137,21048211-21048446,
21048949-21049081,21049195-21049484
Length = 732
Score = 31.1 bits (67), Expect = 0.94
Identities = 22/83 (26%), Positives = 34/83 (40%)
Frame = -3
Query: 642 PIIGKQKVAFSSGCVTWAFLNLSAIGLMNRSNLGGLRVKFSPTNVTLVTMRFQAFLFDLP 463
PII AF+ A + + L+ + + GL+V F + L F + FD
Sbjct: 389 PIITITDNAFNPVGYCLAIMKSEGVNLIGENFMSGLKVVFDRERMVLGWKNFNCYNFDES 448
Query: 462 DFRTLNTSASAWALTLGMGTSHF 394
+N S SA G+G S +
Sbjct: 449 SRLPVNPSPSAVPSKPGLGPSSY 471
>04_04_1253 +
32097840-32097963,32098154-32098329,32098413-32098622,
32098720-32098879,32098993-32099212,32099288-32099438
Length = 346
Score = 30.3 bits (65), Expect = 1.6
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Frame = +2
Query: 290 VAEGALPVYLLDRDVQSRAKVLSN----MIKQKRKEKAGKWDVPIPKVRAQADAEVFKVL 457
VA GA P +D V + +++ M K EKA W +P+ + AE+F
Sbjct: 201 VAVGASPAVRVDTSVPACLSLITGDEEMMNILKGIEKASGWSMPMVHIEDVCRAEIFVAE 260
Query: 458 KSGKSKRKAWKRMVTKVTFVGENFTRKPPKF 550
+ S R + T VT + K P++
Sbjct: 261 EESASGRYICGSLNTTVTEIAGFLAAKYPQY 291
>05_06_0142 + 25968828-25969157,25969283-25969447,25969564-25969884
Length = 271
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +2
Query: 281 TEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAE 442
TE++ EG + L D++ + +M+K KEK K P P++ +A AE
Sbjct: 133 TEEILEGVARLRL-SNDIEFEEETFLDMMKTA-KEKRAKLKAPAPQIPMEARAE 184
>11_05_0069 -
18814789-18815326,18815742-18816001,18816077-18816631,
18816907-18817062
Length = 502
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 708 ITVPLVMTPKLVYICELGFFLTPIIGK 628
+TV L+MTP +++ + F L +IGK
Sbjct: 71 LTVSLIMTPLALFVAFVSFHLAALIGK 97
>02_05_0492 -
29476883-29476949,29477030-29477166,29477292-29477383,
29477490-29477587,29477677-29477804,29477883-29478026,
29478108-29478397,29478553-29478739,29479085-29479210,
29480488-29480538,29480952-29481002,29482639-29484054
Length = 928
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +2
Query: 305 LPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRA--QADAEVFKVLKSG 466
LP+Y +DRD + +LS + + R + A + +P+ + A + DA+ + +L G
Sbjct: 165 LPMYGMDRDTPALNSLLSALCRASRLDDA-RAAIPVARAEAGTRPDADSYAILLEG 219
>01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855
Length = 152
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +2
Query: 422 RAQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRK--PPKFERFIRP 568
+ Q +V K +KSG KRK+ K++ T VTF +K PK+ R P
Sbjct: 13 KTQQALKVAKAVKSGSIKRKS-KKIRTSVTFHRPKTLKKARDPKYPRVSAP 62
>08_02_0580 -
18953208-18953513,18953668-18953868,18953929-18954009,
18954096-18954410,18954493-18954636,18954733-18954822,
18954907-18954983,18955122-18955182,18955264-18955490,
18955581-18955740,18955825-18956025,18956114-18956209,
18956380-18956565,18956641-18956810,18957044-18957275,
18958652-18959029
Length = 974
Score = 27.9 bits (59), Expect = 8.7
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Frame = -2
Query: 265 LLFVRFDFLFHLNLFIAAFLIEYF-----SFDTAEFARLFSAFMR--LTSFTLPFS 119
+LF+ F FLF LN+ AF+I F S T FA F+ +T+F P+S
Sbjct: 310 ILFLLF-FLFQLNMLSFAFMISTFVTKAASATTVGFAIFIIGFLTQLVTTFGFPYS 364
>02_05_0064 -
25529630-25531440,25531663-25531673,25533113-25533198,
25533412-25534259,25535385-25535736
Length = 1035
Score = 27.9 bits (59), Expect = 8.7
Identities = 38/141 (26%), Positives = 56/141 (39%), Gaps = 4/141 (2%)
Frame = +2
Query: 275 HNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAEVFKV 454
H+ + V + + P+ L +VQ N ++ +KE+A + P RA A KV
Sbjct: 509 HDIQTVEDKSGPLTLASLEVQ-------NKVEYVKKERATRTGGIKPSSRASALNMKPKV 561
Query: 455 LK-SGKSKRKAW-KRMVTKVTFVGENFTRKPPKFERFIRPMAL--RFKKAHVTHPELKAT 622
+ K + A K V K T + FE P L R K +T P +
Sbjct: 562 SSFNAKPVKSALPKSAVLKKTLKIDESLFSAKSFEELGLPPLLIDRLNKEGLTAPTEVQS 621
Query: 623 FCLPIIGVKKNPSSQMYTSLG 685
+PII K + Q YT G
Sbjct: 622 AAIPIISQKHDAVIQSYTGSG 642
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,409,185
Number of Sequences: 37544
Number of extensions: 301742
Number of successful extensions: 804
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -