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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10b14
         (426 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0394 - 17261008-17262476,17262554-17262743                       29   2.1  
08_01_0083 - 604175-605776                                             28   2.7  
08_01_0082 - 588269-588434,590800-591653                               28   2.7  
01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962     28   2.7  
05_01_0281 + 2186500-2187435,2187518-2187616,2187707-2187772,218...    28   3.6  
12_01_0827 - 7662180-7662192,7662451-7662764                           27   4.8  
04_04_0532 + 26058100-26058229,26058355-26058559,26058678-260591...    27   4.8  
01_07_0315 - 42692539-42693260,42693357-42693609                       27   6.3  
01_06_0903 + 32862551-32864752,32865341-32865535,32866219-328665...    27   6.3  
08_02_0393 + 16621137-16621139,16621392-16621583,16622559-166226...    27   8.3  
02_05_0970 - 33179180-33179210,33179297-33179441,33180307-331803...    27   8.3  
01_07_0317 + 42699035-42699305,42699411-42700132                       27   8.3  

>09_04_0394 - 17261008-17262476,17262554-17262743
          Length = 552

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -2

Query: 311 KPNEGRRRNRFVPSLLSDVWNVWLLIVAC 225
           KP    RR   +PS  S VW V LL+V C
Sbjct: 4   KPTRPHRRPPPLPSKTSGVWPVALLVVLC 32


>08_01_0083 - 604175-605776
          Length = 533

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 95  TPAPFFSRYHTQTQKLGLQTPPG*TSHI-QKIQEPFIDK 208
           TPAP F R+  +T  + +  P G   HI ++++ P + +
Sbjct: 218 TPAPVFRRWFVETSPVPIPMPVGKLQHIVRRLERPEVQE 256


>08_01_0082 - 588269-588434,590800-591653
          Length = 339

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 95  TPAPFFSRYHTQTQKLGLQTPPG*TSHI-QKIQEPFIDK 208
           TPAP F R+  +T  + +  P G   HI ++++ P + +
Sbjct: 221 TPAPVFRRWFVETSPVPIPMPVGKLQHIVRRLERPEVQE 259


>01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962
          Length = 774

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 214 EVTEHATINSQTFHTSDSSEGTKRFRRLPSF 306
           +++EH T  S+  HT  S+   ++ RRL SF
Sbjct: 696 KISEHDTDKSRRPHTKKSATSPRKMRRLSSF 726


>05_01_0281 +
           2186500-2187435,2187518-2187616,2187707-2187772,
           2187850-2188266
          Length = 505

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 114 LKNGAGVSNHMWHRLKNDDGDDKPCLN 34
           L  G G +NH  H   +DD DD P L+
Sbjct: 56  LMRGGGAANHHHHDDDDDDDDDVPWLH 82


>12_01_0827 - 7662180-7662192,7662451-7662764
          Length = 108

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +2

Query: 212 PKLQNTLLLTARH--STHPTVAKERSDFVACPR 304
           PK Q T++ +AR   +T   + ++RSD  ACPR
Sbjct: 25  PKTQQTVVPSARGPTATDQVLPRQRSDRSACPR 57


>04_04_0532 +
           26058100-26058229,26058355-26058559,26058678-26059157,
           26059262-26059354,26059526-26059636,26059720-26059792,
           26060072-26060208,26061040-26061097
          Length = 428

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 115 PVSHADAEARVTDAARVDLAHTEDPGAVH*QAAE 216
           P +   A  R T  A+VD A  EDPG +   A E
Sbjct: 87  PQAPPPAPTRATKKAKVDAAKNEDPGGMSAPAKE 120


>01_07_0315 - 42692539-42693260,42693357-42693609
          Length = 324

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = -1

Query: 195 GSWIFCMCEVYPGGVC-NPSF 136
           G   FCMC+ YPG  C +P F
Sbjct: 79  GCKTFCMCDFYPGVSCGDPRF 99


>01_06_0903 +
           32862551-32864752,32865341-32865535,32866219-32866523,
           32866664-32866849,32867137-32867314,32867548-32867574
          Length = 1030

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = +2

Query: 47  LSSPSSFFNRCHIWFDTPAPFFSRYHTQT 133
           LSSPS   +R    FDT  PF  R HTQ+
Sbjct: 626 LSSPSPRHSRAS--FDTAMPFTPRRHTQS 652


>08_02_0393 +
           16621137-16621139,16621392-16621583,16622559-16622612,
           16623041-16623160,16623280-16623501,16623594-16623650,
           16623993-16624046,16624395-16624426,16624888-16625023,
           16625108-16625278,16625430-16625661,16626018-16626022
          Length = 425

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 231 SVFCNFGGLSMNGSWIFCMCEVYPGGVCNPSF 136
           S  CNF  LS+ G +I+ + E++   VC+ SF
Sbjct: 82  SKICNFHTLSLLGYFIYNVLEIFIIIVCSISF 113


>02_05_0970 -
           33179180-33179210,33179297-33179441,33180307-33180362,
           33180650-33180691,33180814-33180866,33181059-33181490,
           33181630-33181707,33181785-33181870,33183588-33183689,
           33183754-33183960,33184976-33185336,33185463-33185626,
           33185709-33185817,33186468-33186485
          Length = 627

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
 Frame = +2

Query: 26  ITQFKHGLSSPSSFFNRCHI-WFDTPAPFFSRYHTQTQKLGLQTPPG*TSHIQKIQEP 196
           +T     L+SP + +      W + PA     +HT       Q PP    H QK Q P
Sbjct: 472 LTTLGLNLNSPDNLYKTFGSPWSNEPAKGEPEFHTPACYSAEQPPPLQPIHFQKFQTP 529


>01_07_0317 + 42699035-42699305,42699411-42700132
          Length = 330

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = -1

Query: 183 FCMCEVYPGGVC-NPSF 136
           FCMC+ YPG  C +P F
Sbjct: 89  FCMCDFYPGVSCGDPRF 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,350,307
Number of Sequences: 37544
Number of extensions: 205132
Number of successful extensions: 557
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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