Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10d12
         (473 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0087 - 10520708-10520823,10521041-10521130,10521571-105219...    37   0.007
01_05_0599 - 23550663-23550849,23553236-23553417                       29   2.5  
12_01_0107 - 843820-846335,846400-846511                               28   3.3  
11_06_0125 - 20356683-20357071,20359531-20362285                       28   3.3  
05_07_0294 - 29038259-29038420,29038526-29038632,29038889-290390...    28   4.4  
05_06_0195 + 26291126-26291316,26292432-26292618                       28   4.4  
12_01_0684 + 5828947-5829012,5831123-5832103,5832200-5832326,583...    27   5.8  
03_01_0490 + 3711009-3711383,3712104-3712202,3713209-3713461,371...    27   5.8  

>10_06_0087 -
           10520708-10520823,10521041-10521130,10521571-10521901,
           10522248-10522409,10522506-10522726,10523852-10524056
          Length = 374

 Score = 37.1 bits (82), Expect = 0.007
 Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = +1

Query: 175 NIFMKYARVELAPPKLSELPQIRQGIGNLITSAKTGAWK-RQTVKEATLNVLVGAEVIFW 351
           N+F+    + L  P+ S+ PQ  +   N I  +KTG WK   TV+  T  V+VG +V   
Sbjct: 53  NVFVGM-NISLIDPRNSDDPQSPKNGENAIIKSKTGYWKVVGTVRIPTSTVIVGMKVSLD 111

Query: 352 FYIGEC-IGKR 381
            Y GE   GKR
Sbjct: 112 HYEGEAPSGKR 122


>01_05_0599 - 23550663-23550849,23553236-23553417
          Length = 122

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = +1

Query: 286 WK-RQTVKEATLNV--LVGAEVIFWFYIGECIGKRH-LVGYDV 402
           WK R+ +K   L +  L G E+  WF +GE +G+   + GY V
Sbjct: 80  WKNRKELKVEDLGIVTLFGVELYAWFCVGEIVGRGFTITGYKV 122


>12_01_0107 - 843820-846335,846400-846511
          Length = 875

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -3

Query: 399 IVSNKVTFANAFTNVEPEDDFSSNQ--NI*CGLFD 301
           +V  K+TFA+    V   +   SN+  NI C LFD
Sbjct: 99  VVQEKITFASEEKTVSTSNSIDSNEHVNIECSLFD 133


>11_06_0125 - 20356683-20357071,20359531-20362285
          Length = 1047

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = -3

Query: 411  KNLNIVSNKVTFANAFTNVEPEDDFSSNQNI*CGLFDCLPFPCSC 277
            K ++IV NK+       + E  DDFSS Q I C L   L    SC
Sbjct: 970  KVMDIVDNKLCLGIDQHDPETTDDFSSKQKIDC-LISLLRLGLSC 1013


>05_07_0294 -
           29038259-29038420,29038526-29038632,29038889-29039093,
           29039173-29039536,29039588-29039772,29039879-29040080,
           29040697-29041589
          Length = 705

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +1

Query: 211 PPKLSELPQIRQGIGNLITSAKTGAWKRQTVKEATLNVLVGAE 339
           P +   L ++ + +G  + + KTG WK   ++EA   +  GA+
Sbjct: 320 PAEFQRLQEVERHLGRCMDARKTGDWK-SALREADAAIANGAD 361


>05_06_0195 + 26291126-26291316,26292432-26292618
          Length = 125

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 289 KRQTVKEATLNVLVGAEVIFWFYIGECIGKRH-LVGYDV 402
           K   V+ A +  L G E+  WF +GE +G+     GY V
Sbjct: 87  KDLNVEHAGVAALFGIELYAWFCVGEIVGRGFTFTGYHV 125


>12_01_0684 +
           5828947-5829012,5831123-5832103,5832200-5832326,
           5832623-5832705,5832752-5832917,5833337-5833399,
           5833624-5833733,5834227-5834276,5834528-5834664,
           5835180-5835281,5835871-5835988,5836575-5836627,
           5836710-5836813,5836910-5836972,5837375-5837503,
           5837508-5837605,5838446-5838500,5839260-5839311,
           5839996-5840113,5841906-5842035,5842156-5842437
          Length = 1028

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -3

Query: 300 CLPFPCSCLSTCDQITDAL-SNLRQLT*L-GWS 208
           C P  CS L T +Q+T AL ++L  L  L GWS
Sbjct: 687 CFPLNCSHLETINQLTGALPTSLGDLPYLEGWS 719


>03_01_0490 +
           3711009-3711383,3712104-3712202,3713209-3713461,
           3713908-3714090,3714091-3714227,3714511-3714710,
           3714797-3714994,3715109-3715271
          Length = 535

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +1

Query: 214 PKLSELPQIRQGIGNLITSAKTGAWKRQTVKEATLNVLVGAEVIFW--FYIGECIG 375
           P +++LP    G+  +    + G WK +T  E  +++ V A +  W   Y+G+  G
Sbjct: 296 PNIADLPTGTAGVWRVSAINEAGGWKDRTTVE-DMDLAVRASLKGWQFLYVGDIRG 350


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,525,802
Number of Sequences: 37544
Number of extensions: 178004
Number of successful extensions: 332
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)