Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10d10
(706 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0566 + 34760991-34761186,34761283-34761455,34762370-347624... 79 3e-15
06_03_1297 + 29110432-29110542,29110613-29110804,29110893-291109... 70 2e-12
02_01_0326 - 2230617-2230735,2231430-2231493,2231646-2231849,223... 64 8e-11
12_01_0810 + 7429834-7429960,7430534-7430696,7430796-7430844,743... 33 0.29
05_05_0080 - 22243175-22243226,22243342-22243389,22243485-222435... 31 0.89
10_05_0069 + 8782535-8782920,8783016-8783281,8783588-8783869,878... 30 2.1
06_03_1303 + 29180837-29181205,29181289-29181306,29181337-291816... 30 2.1
10_08_0117 + 14942478-14942628,14943247-14943315,14943701-149438... 29 2.7
06_03_0854 + 25400855-25403741,25406174-25407708 29 2.7
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28... 29 2.7
06_01_0586 - 4203024-4203425,4203527-4203595,4203681-4203746,420... 28 6.3
03_05_0845 - 28155065-28155374,28156201-28156342,28156375-281565... 28 6.3
02_05_1338 + 35790726-35791862 28 6.3
01_07_0251 + 42289617-42291241,42291424-42292156 28 6.3
11_01_0236 + 1811822-1812971,1814930-1814979,1815676-1816116,181... 28 8.3
>03_06_0566 +
34760991-34761186,34761283-34761455,34762370-34762416,
34762546-34762640,34762734-34762816,34763331-34763399,
34763874-34764059,34764374-34764508,34764774-34764908,
34765148-34765218,34765393-34765470,34765626-34765767,
34765940-34766050
Length = 506
Score = 79.4 bits (187), Expect = 3e-15
Identities = 71/199 (35%), Positives = 91/199 (45%), Gaps = 12/199 (6%)
Frame = +3
Query: 144 LRQATDRFIVAYGRRPEVAAAAPGRVNLIGEHVDYCEGF-VLPVAIPFLTVVVGSYNNTD 320
L + D+F Y RP + A +PGRVNLIGEH+DY EG+ VLP+AI +V
Sbjct: 43 LARLADKFHAVYAARPALFARSPGRVNLIGEHIDY-EGYSVLPMAIRQDMIVAIRRAEGK 101
Query: 321 VCRVITVLASGEELEASFPATIKAELRPGQPEWANYI----KGVIANFPIK------VNG 470
RV V + +PA E+ +W +Y KGV K G
Sbjct: 102 EVRVANV--DDKYPICVYPADPDKEIDIKNHKWGHYFMCGYKGVYEYCRSKGIDMGGPVG 159
Query: 471 FDIVVVSDVPMGSGVSSSAAIEVAVFTLLEGLTGRMVSLVEKAKL-CQKAEHDFPGMPCG 647
D+VV VP GSG+SSSAA + + G+ + E A+ CQ H G G
Sbjct: 160 LDVVVDGTVPTGSGLSSSAAFVCSATIAIMGVLEKNFPKKEVAQFTCQSERH--IGTQSG 217
Query: 648 IMDQYIVTMGKKDHALLID 704
MDQ I M K A LID
Sbjct: 218 GMDQAISIMAKPGFAELID 236
>06_03_1297 +
29110432-29110542,29110613-29110804,29110893-29110976,
29111115-29111191,29111410-29111476,29111640-29111697,
29111823-29111890,29111981-29112043,29112549-29112651,
29112685-29112845,29112934-29113053,29113300-29113356,
29113646-29113809,29113896-29114055,29114720-29114803,
29115074-29115196,29115368-29115498,29115577-29115658,
29115876-29115963,29116143-29116186,29116264-29116387,
29116450-29116537,29116649-29116849,29116894-29117104,
29117383-29117454,29117587-29117790,29117959-29118087
Length = 1021
Score = 69.7 bits (163), Expect = 2e-12
Identities = 40/103 (38%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Frame = +3
Query: 402 PGQPEWANYIKGVI----ANFPIK-VNGFDIVVVSDVPMGSGVSSSAAIEVAVFTLLEGL 566
P Q +WA Y+ G I +K + I+V SDVP G GVSSSA++EVA +
Sbjct: 605 PSQ-KWAAYVAGTILVLMTELDVKFTDSMSILVSSDVPEGKGVSSSASVEVATMAAIAAA 663
Query: 567 TGRMVSLVEKAKLCQKAEHDFPGMPCGIMDQYIVTMGKKDHAL 695
G ++ + A LCQK E+ G PCG+MDQ G+ + L
Sbjct: 664 YGLNIAPRDLALLCQKVENHVVGAPCGVMDQMTSACGEANKLL 706
>02_01_0326 -
2230617-2230735,2231430-2231493,2231646-2231849,
2231945-2232016,2232293-2232458,2232543-2232758,
2232873-2232949,2233056-2233151,2233237-2233280,
2233435-2233522,2233805-2233886,2233961-2234091,
2234264-2234350,2234804-2234887,2234985-2235144,
2235251-2235414,2235757-2235762,2235823-2235879,
2236159-2236278,2236387-2236496,2236587-2236689,
2236789-2236842,2237106-2237168,2237258-2237325,
2237412-2237469,2237684-2237750,2238233-2238309,
2238433-2238516,2238652-2238828,2239010-2239144
Length = 1010
Score = 64.5 bits (150), Expect = 8e-11
Identities = 38/103 (36%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Frame = +3
Query: 402 PGQPEWANYIKGVIANFPIKV-----NGFDIVVVSDVPMGSGVSSSAAIEVAVFTLLEGL 566
P Q +WA Y+ G I ++ + I+V S VP G GVSSSA++EVA + +
Sbjct: 599 PSQ-KWAAYVAGTILVLMTELGVVFTDSMSILVSSSVPEGKGVSSSASVEVASMSAIAAA 657
Query: 567 TGRMVSLVEKAKLCQKAEHDFPGMPCGIMDQYIVTMGKKDHAL 695
G + + A LCQK E+ G PCG+MDQ G+ + L
Sbjct: 658 YGLNIPPRDLAILCQKVENRIVGAPCGVMDQMTSACGEANKLL 700
>12_01_0810 +
7429834-7429960,7430534-7430696,7430796-7430844,
7431203-7431385,7431824-7431898,7431963-7432148,
7432362-7432450,7432892-7433444
Length = 474
Score = 32.7 bits (71), Expect = 0.29
Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
Frame = +3
Query: 177 YGRRPEVAAAAPGRV-NLIGEH--VDYCEGFVLPVAIPFLTVVVGSYNNTDVCRVITVLA 347
Y PE+ AP R ++ G ++Y + +P+ + ++ N + +L
Sbjct: 207 YALNPELKVVAPWREWDITGREDAIEYAKKHNVPIPVTKKSIYSRDRNLWHLSHEGDILE 266
Query: 348 --SGEELEASFPATIKAELRPGQPEWANYIKGVIANFPIKVNGFDI 479
+ E E + ++ E P +PE+ G+IA P+ +NG D+
Sbjct: 267 DPANEPKEDMYMMSVAPENAPSKPEYLEI--GIIAGVPVSINGKDL 310
>05_05_0080 -
22243175-22243226,22243342-22243389,22243485-22243540,
22243752-22243819,22244712-22244773,22245166-22245214,
22245818-22245899,22245987-22246064,22246441-22246499,
22246727-22246805,22246946-22247218
Length = 301
Score = 31.1 bits (67), Expect = 0.89
Identities = 27/99 (27%), Positives = 42/99 (42%)
Frame = +3
Query: 342 LASGEELEASFPATIKAELRPGQPEWANYIKGVIANFPIKVNGFDIVVVSDVPMGSGVSS 521
LA E + PAT L + E + N P K+ V+V D + +G +
Sbjct: 172 LAMAENASSVLPATKTYHLGLRRDEETLQPSIYLNNLPDKIPEGTRVLVVDPMLATGGTI 231
Query: 522 SAAIEVAVFTLLEGLTGRMVSLVEKAKLCQKAEHDFPGM 638
AAI++ V + ++VS V QK + FPG+
Sbjct: 232 VAAIDLLVERGVTSKQIKVVSAVAAPPALQKLSNKFPGL 270
>10_05_0069 +
8782535-8782920,8783016-8783281,8783588-8783869,
8784559-8784632,8787230-8787461,8788067-8788077
Length = 416
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +3
Query: 477 IVVVSDVPMGSGVSSSAAIEVAVFTLL 557
+ V SD+PMGSG+ SSAA V++ +L
Sbjct: 135 VTVSSDLPMGSGLGSSAAFCVSMSGVL 161
>06_03_1303 +
29180837-29181205,29181289-29181306,29181337-29181622,
29185008-29186284,29186499-29187005
Length = 818
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -1
Query: 565 SPSSSVNTATSMAALLETPEPIGTSDTTTISKPFTFI 455
SPS S + + S +A TP GTS TTT S ++ +
Sbjct: 530 SPSPSPSPSPSPSASATTPTQTGTSTTTTTSSMYSIL 566
>10_08_0117 +
14942478-14942628,14943247-14943315,14943701-14943801,
14944395-14944619
Length = 181
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 304 RTTTQMSVA*SQCWRPVRSWRPVSL-LPSRQSYDQANRNGLII 429
R++T VA ++ W +R+W + LP Q D A + GL +
Sbjct: 39 RSSTAYEVAGTEVWDMLRNWLNIGFQLPRDQDLDLAEKKGLTV 81
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/51 (37%), Positives = 31/51 (60%)
Frame = +3
Query: 465 NGFDIVVVSDVPMGSGVSSSAAIEVAVFTLLEGLTGRMVSLVEKAKLCQKA 617
+G ++V+V + VSSSA+ EV V L+EG R+V VE+ + ++A
Sbjct: 60 SGLELVIVPVMEGDQVVSSSASAEVLVSPLVEGEV-RVVPAVERRRWRRQA 109
>02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-282648,
282768-282923,283224-283349,283426-283560,283815-283942,
284037-284148,284233-284547,284655-284771,284871-285166,
285252-285783,287980-288082,288808-288881,288965-289062,
289340-289380,289977-290032,290170-290244,290377-290469,
290602-290850,290930-291002,291681-291766,291853-291938,
292067-292142,292280-292347,292430-292496,292570-292665,
292741-292843,293214-293309,293396-293466
Length = 2047
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/71 (25%), Positives = 32/71 (45%)
Frame = +1
Query: 214 DASTSSENTLTIAKASFYQWQYRSLPSSWDRTTTQMSVA*SQCWRPVRSWRPVSLLPSRQ 393
D T+ N ++ S RS +SW T ++ A + P + P L+P +Q
Sbjct: 1430 DNITTPNNGSGLSSGSNSSSFSRSRAASWSGTYSEQINAVAGARSPDQQTMPSPLMPGKQ 1489
Query: 394 SYDQANRNGLI 426
S+ ++N N +
Sbjct: 1490 SHSRSNSNSSV 1500
>06_01_0586 -
4203024-4203425,4203527-4203595,4203681-4203746,
4204006-4204071,4204642-4204719,4204811-4205233
Length = 367
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/25 (44%), Positives = 20/25 (80%)
Frame = -1
Query: 583 LTILPVSPSSSVNTATSMAALLETP 509
L ++P+S +S++++ATS A+LL P
Sbjct: 300 LCLMPISLASAISSATSSASLLSRP 324
>03_05_0845 -
28155065-28155374,28156201-28156342,28156375-28156505,
28156591-28156784,28156859-28156969,28157234-28157399,
28157501-28157668,28157766-28158787
Length = 747
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -1
Query: 313 LLYDPTTTVRNGIATGRTKPSQ*STCSPMRLTRPGAAAATSGRLPYATMN 164
+LY TTV G+ RT+ S S P AAA G+ P T++
Sbjct: 275 MLYREATTVGGGVPYVRTQRSTRRVASGGTCWAPSAAATPEGKRPGQTIS 324
>02_05_1338 + 35790726-35791862
Length = 378
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 456 IKVNGFDIVVVSDVPMGSGVSSSAAIEVAVFTLLEGLTGRMV 581
+K + I + +P+GSG+ SSAA A ++ L G ++
Sbjct: 137 VKSHAVSIHLTKGLPLGSGLGSSAASAAAAAKAVDALFGSLL 178
>01_07_0251 + 42289617-42291241,42291424-42292156
Length = 785
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -3
Query: 233 SDEVDASRRRCSDFRSSAVCDYESVSGLSQQHPLAFRYRFAIHYFN 96
S +VDA+ RR + S V + +V QH A R A+H+F+
Sbjct: 468 SGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCA---RDALHFFD 510
>11_01_0236 +
1811822-1812971,1814930-1814979,1815676-1816116,
1816199-1816309,1816934-1817074,1817153-1817323,
1817421-1817625,1817714-1817886,1817997-1818079,
1818487-1818626,1818806-1818891,1818957-1819142,
1819172-1819365,1820387-1820736,1821153-1821235
Length = 1187
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/54 (27%), Positives = 32/54 (59%)
Frame = -1
Query: 214 PGAAAATSGRLPYATMNLSVACRNNTPSPFGIASQFIILTQNIYISFVITIPLS 53
P AAA ++G+ A+M++ + +++P+P + ++L+ Y+S IT+ S
Sbjct: 12 PAAAAGSNGKGTAASMDVVSSSSSSSPAPAPSVLKSVLLSY-AYVSVWITLSFS 64
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,900,547
Number of Sequences: 37544
Number of extensions: 507183
Number of successful extensions: 1511
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1508
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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