Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10c12
(362 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0042 - 27265687-27267159 29 1.1
02_04_0414 - 22685981-22686178,22686374-22686465,22686580-226866... 28 2.0
01_06_0624 - 30683249-30684631 28 2.6
06_03_0691 + 23552437-23552914,23555168-23555953,23556045-235561... 27 4.5
06_01_0779 - 5823389-5823787 27 4.5
01_05_0225 - 19501643-19501903,19503974-19504477 27 4.5
12_02_0979 - 25009721-25009975,25010058-25010127,25010216-250103... 27 6.0
01_05_0099 - 18098169-18098390,18098878-18098972,18099063-180991... 27 6.0
01_03_0246 - 14207899-14208052,14208132-14208206,14208682-142088... 27 6.0
09_04_0608 + 18924648-18924899,18926341-18926435,18926903-189272... 26 7.9
09_04_0528 - 18348071-18348136,18348477-18351209 26 7.9
02_01_0763 - 5665010-5665202,5665285-5665375,5665460-5666245,566... 26 7.9
>05_07_0042 - 27265687-27267159
Length = 490
Score = 29.1 bits (62), Expect = 1.1
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 159 LLKILGIPFEIAPAYARCSWADIL 88
++ ++ +PF + P YA+C W D L
Sbjct: 178 VMAMVELPFMVRPEYAQCLWGDTL 201
>02_04_0414 -
22685981-22686178,22686374-22686465,22686580-22686676,
22686801-22686916,22687314-22687513,22687588-22687740,
22687960-22688171,22688403-22688519,22688613-22688687,
22688815-22688853,22689518-22689689,22689809-22690056,
22690151-22690324,22690418-22690504
Length = 659
Score = 28.3 bits (60), Expect = 2.0
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 147 ISSEDFVRAFLK*SRPSSLDT*YMKELKGSITDYHGRTLLILKMINK 287
I E F+R +L S T K+LKGS++ T +L +IN+
Sbjct: 80 IEFESFLREYLNLQAKGSSKTGGKKKLKGSVSFLKASTTTLLHVINE 126
>01_06_0624 - 30683249-30684631
Length = 460
Score = 27.9 bits (59), Expect = 2.6
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -3
Query: 237 CSLSTPSYIKYPMMKGGTTLKTLSRNLLKILGI 139
C+ + SY+ P+M+ + + R+LL+I G+
Sbjct: 121 CASALASYLHIPVMRSAVSFGQMGRSLLRIPGV 153
>06_03_0691 +
23552437-23552914,23555168-23555953,23556045-23556135,
23556214-23556406
Length = 515
Score = 27.1 bits (57), Expect = 4.5
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 137 GIPNIFRRFRESVFKVVPPFIIGYLIYEGVER 232
G+ ++ ++ KVVP I YL+YE +++
Sbjct: 479 GVSGFYKGILPNLLKVVPAASITYLVYEAMKK 510
>06_01_0779 - 5823389-5823787
Length = 132
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 150 ILGIPFEIAPAYARCSWADIL*VTRPRILASSP 52
+LGIP +RC W VT PR++ S+P
Sbjct: 67 VLGIP--ATTTASRCCWTSWWIVTAPRMMLSAP 97
>01_05_0225 - 19501643-19501903,19503974-19504477
Length = 254
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 244 SVMLPFNSFIYQVSNDEGRDYFKNALTKSSEDIRNTI 134
S +LP+ + VSN+E + + KSS+D R +I
Sbjct: 158 SPLLPWRDSLVMVSNEEYKSVEHRVVIKSSQDARVSI 194
>12_02_0979 -
25009721-25009975,25010058-25010127,25010216-25010381,
25010501-25010651,25010843-25010890,25011172-25011225,
25011400-25011513,25012666-25012782,25012899-25012991,
25013085-25013123,25013990-25014055
Length = 390
Score = 26.6 bits (56), Expect = 6.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 83 TYKISAHEQRAYAGAISNGIPNIFRRFRESVFKV 184
TYK+SAH + Y + I RRF+ F+V
Sbjct: 323 TYKLSAHLRHNYLTVFTIAALEILRRFQWVFFRV 356
>01_05_0099 -
18098169-18098390,18098878-18098972,18099063-18099131,
18099277-18099352,18101412-18101524,18104137-18104185,
18104540-18104572,18105446-18105552,18106892-18106990,
18107122-18107203
Length = 314
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +2
Query: 137 GIPNIFRRFRESVFKVVPPFIIGYLIYEGVEREHHRL 247
GIP +R ++ + P +I + YE + R H+L
Sbjct: 275 GIPGFYRGCATNLLRTTPNAVITFTSYEMINRLMHQL 311
>01_03_0246 -
14207899-14208052,14208132-14208206,14208682-14208801,
14208905-14208981,14209204-14209285,14209439-14209485,
14209561-14209681,14210188-14210235,14210478-14210569,
14211001-14211057,14211203-14211273,14211376-14211493,
14211574-14211621
Length = 369
Score = 26.6 bits (56), Expect = 6.0
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +2
Query: 194 FIIGYLIYEGVEREHHRLSRKNP 262
F+IGYL++ G ++ H + +K+P
Sbjct: 251 FVIGYLVFRGANKQKH-VFKKSP 272
>09_04_0608 +
18924648-18924899,18926341-18926435,18926903-18927236,
18927345-18927582,18927813-18928069
Length = 391
Score = 26.2 bits (55), Expect = 7.9
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 74 GLVTYKISAHEQRAYAGAISN-GIPNIFRRFRESVFKVVPPFIIGYLIYE 220
G + K H A A I G+P ++R + S KV+P I ++ YE
Sbjct: 327 GALQGKCPPHMIAALAEVIQEEGLPGLYRGWGASCLKVMPNSGITWMFYE 376
>09_04_0528 - 18348071-18348136,18348477-18351209
Length = 932
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = -2
Query: 229 FNSFIYQVSNDEGRDYFKNALTKSSEDIRNTI*NSSSICSLFMGRYLVGDK 77
+N I +V N+E + + L S + + N + N C++F Y++ K
Sbjct: 409 YNQLISEVHNNENLNRVEKILNLSYKHLPNYLKNCFLYCAMFPEDYIIQRK 459
>02_01_0763 -
5665010-5665202,5665285-5665375,5665460-5666245,
5667745-5668225
Length = 516
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 137 GIPNIFRRFRESVFKVVPPFIIGYLIYEGVER 232
GI ++ ++ KVVP I YL+YE +++
Sbjct: 480 GISGFYKGLVPNLLKVVPAASITYLVYETMKK 511
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,346,908
Number of Sequences: 37544
Number of extensions: 150397
Number of successful extensions: 352
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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