Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10a11
(594 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0371 + 28364896-28366182,28366510-28366623,28366861-283671... 35 0.043
01_05_0397 + 21753095-21753814 29 2.1
11_06_0271 - 21804629-21805836,21805997-21806015 29 2.8
08_02_1417 - 26922775-26922986,26923102-26923291,26923816-269239... 29 3.7
11_01_0438 - 3349506-3351239 28 6.5
02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127... 28 6.5
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257... 27 8.5
07_03_1382 - 26170563-26170631,26171151-26171843 27 8.5
01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,467... 27 8.5
>02_05_0371 +
28364896-28366182,28366510-28366623,28366861-28367125,
28367981-28368105
Length = 596
Score = 35.1 bits (77), Expect = 0.043
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = -3
Query: 433 LRAVSDRGVGGELDNSAGVLGIVGV-DIQASTDNSSALHDDLVTVSRSSRNAVQDFDRQN 257
+R + D GVG E++ G I+G+ +Q STD+S+++ +++ + R + Q
Sbjct: 390 MRRMEDVGVGLEIETRPGGCAIIGLKPLQLSTDHSTSIEEEVHRIKREHPDDDQCIVNDR 449
Query: 256 VAQVERIEVNRILGVAF 206
V R++V R G +
Sbjct: 450 VK--GRLKVTRAFGAGY 464
>01_05_0397 + 21753095-21753814
Length = 239
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 350 LDVNPNDSQHTCRVVELASNTAIADSAKVKSCAVCNK 460
+D N + ++H +++ +TA +DS V SC VC +
Sbjct: 8 VDTNWSAAEHDHIAIDIGDSTAGSDSDDVPSCVVCTE 44
>11_06_0271 - 21804629-21805836,21805997-21806015
Length = 408
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +2
Query: 371 SQHTCRVVELASNTAIADSAKVKSCAVCNKDNCNGAGSISFSLPLATFALIATYF 535
S C V ++S T ++S VC +G+ I+F A+++TYF
Sbjct: 183 SDSMCIVAAISSRTLALWHPGMRSWCVCRSFGIDGSADIAFYQGRIYMAMVSTYF 237
>08_02_1417 -
26922775-26922986,26923102-26923291,26923816-26923928,
26924032-26924112,26925329-26926661
Length = 642
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = -2
Query: 170 SSYPVHCYIGST*CNSLFRIALVEQRRRMLHFLP 69
+ + ++CYIGS+ + + +VE+ RR+ + +P
Sbjct: 137 NGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMP 170
>11_01_0438 - 3349506-3351239
Length = 577
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +2
Query: 290 GAPRYCHKIVMKSGTVV---RTCLDVNPNDSQHTCRVVELASNTAIAD 424
GAPR +++ +++GT RTC + P D+ + E+ A+ D
Sbjct: 308 GAPRGAYRLALRNGTFAPADRTCGRIAPTDANPVWAMEEMPLPRAMGD 355
>02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,
1279204-1279336,1279425-1279551,1279788-1280284,
1280578-1280642,1280722-1280823,1281020-1281162,
1281761-1281816,1282214-1282869,1282975-1283165,
1283280-1283574,1283738-1283778,1284082-1284104,
1284173-1284369,1284472-1284581,1285309-1285639,
1285968-1286060,1286095-1286166,1286626-1286886
Length = 1788
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 216 PRIRLTSIRSTCATFCLSKS*TALRELLDTVTRSS*RAELLSVLAWMST 362
P+ RL S+R F L +S T+ ++ + SS + + L WM T
Sbjct: 1038 PQSRLHSVREELLQFLLEESKTSSTDVYKSFKSSSEKCPNICYLLWMDT 1086
>08_02_1277 + 25823835-25825113,25825201-25825418,25825501-25825724,
25826468-25827080,25827735-25827775,25830549-25831191,
25832595-25834012,25834110-25834251,25834415-25834522,
25835346-25835558,25835643-25835753,25836099-25836293,
25836555-25836695,25836835-25836909
Length = 1806
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 132 SSATNVTVNRIRTAGTRSRAPNPQ*NATPRIRLTSIRST 248
+S+TN +++ ++T+G S P P N SI ST
Sbjct: 1039 NSSTNFSIDAVKTSGLNSWTPVPVTNTVRSTHSNSISST 1077
>07_03_1382 - 26170563-26170631,26171151-26171843
Length = 253
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 365 NDSQHTCRVVELASNTAIADSAKVKSCAVC 454
ND H V+++ + A A + +SCAVC
Sbjct: 42 NDDDHHSHVIDIDAAAAAAAAGGRRSCAVC 71
>01_01_0623 +
4672581-4673413,4674274-4674389,4674694-4674902,
4675953-4676072,4676185-4676313,4676394-4676442,
4676899-4676970,4677574-4677707,4677798-4677915,
4678332-4678541,4678630-4678942,4679539-4679632,
4679854-4679962,4680243-4680514,4680597-4680724,
4680832-4681066,4681570-4681758,4681845-4682128,
4682218-4682398,4682486-4682728,4682904-4682986,
4683119-4683227,4687996-4688091,4688675-4688764,
4688881-4689129,4689233-4689412,4690179-4690250,
4691385-4691474,4691605-4691705,4691794-4691959
Length = 1757
Score = 27.5 bits (58), Expect = 8.5
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Frame = +2
Query: 167 NCGD---PFKSAKPPVECNTQDSINFNTLYLRNILPVEVLNSVTGAPRYCHKI----VMK 325
NC D P + PP +CN S++F TL + + +++ V G + ++ V
Sbjct: 526 NCDDDICPVEIIHPPEDCNLNSSLSF-TLQVCRVEDIDIWGLVQGTVIHFNRARSVSVHT 584
Query: 326 SGTVVRTCL 352
SGT+ T L
Sbjct: 585 SGTISATGL 593
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,594,033
Number of Sequences: 37544
Number of extensions: 316436
Number of successful extensions: 864
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -