Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0060
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-45...    28   7.6  
06_03_0203 - 17863130-17863940,17864023-17864341,17864653-178647...    28   7.6  
02_02_0336 + 9081958-9082222,9082466-9082569,9082632-9082681,908...    28   7.6  

>11_01_0059 -
           444991-446908,447595-448218,448431-448861,450974-452293
          Length = 1430

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -1

Query: 142 LHVLGVMCILRGPSHPT-QLCLKEFAELSH 56
           LH L V C+L  PSH T  + LK  + L H
Sbjct: 841 LHALRVHCLLPNPSHLTIPIALKSASRLPH 870


>06_03_0203 -
           17863130-17863940,17864023-17864341,17864653-17864716,
           17864811-17864929,17865515-17865640,17866626-17866632,
           17867421-17867562,17867720-17867738,17868082-17868292
          Length = 605

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 615 FLNLKKRKCKLLFKTLPLYSELKFIQHNIFFQSSH 511
           +L+LK+ +C  LF +  +YS+   +    FF S+H
Sbjct: 476 YLDLKREECSRLFPSGRIYSQAFHLAGQGFFLSAH 510


>02_02_0336 +
           9081958-9082222,9082466-9082569,9082632-9082681,
           9083484-9083566,9084129-9084257,9085821-9085881,
           9086010-9086826
          Length = 502

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 615 FLNLKKRKCKLLFKTLPLYSELKFIQHNIFFQSSH 511
           +L+LK+ +C  LF +  +YS+   +    FF S+H
Sbjct: 371 YLDLKREECSRLFPSGRMYSQAFHLAGQGFFLSAH 405


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,764,896
Number of Sequences: 37544
Number of extensions: 268094
Number of successful extensions: 688
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)