Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0058
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0779 - 19507771-19507992,19508678-19508990,19509235-195092...    44   1e-04
03_01_0224 - 1771582-1771727,1771855-1771980,1772489-1772517,177...    38   0.005
12_01_0461 + 3618414-3618782,3619664-3619794,3620177-3620294,362...    35   0.063
02_05_0356 + 28252154-28252897,28253171-28253377,28253473-282537...    31   0.58 
04_01_0519 + 6831912-6831978,6832333-6832488,6832748-6833098,683...    30   1.8  
03_02_0382 - 7958634-7959272,7959358-7959583,7959725-7959810,795...    29   4.1  
08_02_1374 + 26519720-26519989,26520679-26520737,26520810-265209...    28   7.2  
08_01_0349 - 3082700-3083407                                           27   9.5  
02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,513...    27   9.5  
02_01_0078 - 549625-549766,549961-550490,550592-550744,551036-55...    27   9.5  

>04_03_0779 -
           19507771-19507992,19508678-19508990,19509235-19509296,
           19509845-19509904,19510260-19510367,19510452-19510561,
           19510656-19510701,19510812-19510884,19510970-19511100,
           19511270-19511356,19511871-19511968,19512849-19512971,
           19513091-19513286
          Length = 542

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 18/42 (42%), Positives = 27/42 (64%)
 Frame = +1

Query: 304 HEIRIAGGAVRDLLMGLTPKDLDFATTATPEEMKEMFTAEEV 429
           +++ + GG VRDL+M  TPKD D  TTA   ++K+ F+   V
Sbjct: 108 YDVYLVGGCVRDLIMKKTPKDFDIITTADLRQVKDTFSGSAV 149


>03_01_0224 -
           1771582-1771727,1771855-1771980,1772489-1772517,
           1772689-1772747,1772816-1772929,1773030-1773238,
           1773347-1774087,1775678-1776238,1776295-1776419,
           1778187-1778317,1779020-1779178,1779471-1779728,
           1780140-1780164,1780531-1780592,1780944-1781003,
           1781112-1781219,1781703-1781838,1781880-1781929,
           1782024-1782096,1782209-1782345,1782441-1782527,
           1782624-1782721,1783259-1783369,1783685-1783769,
           1783880-1783969
          Length = 1259

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 16/32 (50%), Positives = 23/32 (71%)
 Frame = +1

Query: 316 IAGGAVRDLLMGLTPKDLDFATTATPEEMKEM 411
           + GG VRDLL+   PKD D  TTA+ +++K+M
Sbjct: 101 LVGGCVRDLLLKRAPKDFDVITTASLQQIKKM 132


>12_01_0461 +
           3618414-3618782,3619664-3619794,3620177-3620294,
           3620602-3620654,3620758-3620807,3620912-3621010,
           3621511-3621620,3621773-3621900,3622071-3622161,
           3622610-3622693,3622863-3623083,3623449-3623527,
           3624134-3624283,3624326-3624470,3624604-3624983,
           3625096-3625197
          Length = 769

 Score = 34.7 bits (76), Expect = 0.063
 Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 12/119 (10%)
 Frame = +1

Query: 307 EIRIAGGAVRDLLMGLTPKDLDFAT--------TATPEEMKEMFTAEE--VRMINVNGER 456
           ++R+AGG VRD L+G    D+D A              E  E+   E+  + +I  N ++
Sbjct: 112 QLRVAGGWVRDKLLGKDSTDIDIALDNMTGQNFCEKVNEYSELLGEEQKGIGVIQCNPDQ 171

Query: 457 HGTI-TARINDKENF-EVTTLRIDMVTDGRFADVQFTKDWKLDANRRDLTINSMFLGFD 627
              + TAR+   + + +   LR +   +            K DA RRDLTINS+F   +
Sbjct: 172 SKHLETARMLIFDIWIDFVNLRSEKYAENSRIPTVEIGTAKEDAFRRDLTINSLFFNIN 230


>02_05_0356 +
           28252154-28252897,28253171-28253377,28253473-28253710,
           28254853-28255220
          Length = 518

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -2

Query: 314 LISCLYLSKIFFRSITSSVNILLNSGESTLITIGFSRHFKFKS 186
           ++SC  L  + F +    + ++L    +TL+ +GFS HF  KS
Sbjct: 396 IVSCYSLFPLLFENQEYPIKVMLLLTYATLMWVGFSSHFAAKS 438


>04_01_0519 +
           6831912-6831978,6832333-6832488,6832748-6833098,
           6833481-6833662,6833756-6834004,6834182-6834406,
           6837492-6837791,6838642-6839215,6839959-6840059
          Length = 734

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 229 VDSPEFKSIFTEEVIDLKKIFDKYKHEIRIAGG 327
           + S  F S   + VI +K +FD+ K  +++ GG
Sbjct: 15  LSSARFLSATQQRVIPMKSVFDRLKESLKVTGG 47


>03_02_0382 -
           7958634-7959272,7959358-7959583,7959725-7959810,
           7959909-7959989,7960102-7960200,7960348-7960466,
           7960557-7960677,7960831-7960881,7961041-7961142,
           7962610-7962717,7962877-7962962,7963353-7963449
          Length = 604

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +1

Query: 469 TARINDKENFEVTTLRIDMVTDGRFADVQFTKDWKL-DANRRDLT 600
           T ++ DK++  V T+++     G  + V  T+D K+ DA+RRD T
Sbjct: 433 TTKVKDKKDRGVLTIKVSSCPHGGASWVLGTRDAKVFDADRRDNT 477


>08_02_1374 +
           26519720-26519989,26520679-26520737,26520810-26520924,
           26521092-26521136,26521424-26521477
          Length = 180

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 101 LLHALNITKKKLQIKVAKLLYISRKSLTSC 12
           + +AL + K KL +KVA +L  S K   SC
Sbjct: 140 MTNALTVVKNKLMMKVASVLPQSEKKRKSC 169


>08_01_0349 - 3082700-3083407
          Length = 235

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = -2

Query: 542 KRPSVTISILKVVTSKFSL--SLIRAVIVPCLSPLTFIILTSSAVNISFISSGVAVV 378
           + PS   ++L V T + S+  S + A +   LS L   ++ S   +  F+SSG AVV
Sbjct: 40  EEPSGKHAVLAVQTMRNSIMASTVLASVAITLSSLVAALMASGVAHGIFVSSGHAVV 96


>02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,
            5139967-5140289,5141373-5142479,5142593-5143279,
            5144214-5144522,5145488-5145823,5146165-5146263,
            5146676-5146940,5146950-5147104,5147666-5149723,
            5150168-5150367,5150662-5150718,5150965-5151079
          Length = 1985

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 235  SPEFKSIFTEEVIDLKKIFDKY 300
            S  F+S++  EV+DL + FDKY
Sbjct: 1026 SQSFESLYKTEVLDLVEKFDKY 1047


>02_01_0078 -
           549625-549766,549961-550490,550592-550744,551036-551182
          Length = 323

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -2

Query: 149 TLHVPLSWKNCPTPKILLHALNITKKKLQIK--VAKLLYISRKS 24
           T H+ L  K+CP P+    A+   K+K   +  V +++Y SRK+
Sbjct: 246 TSHIVLPEKSCPDPEKRQRAVQRYKEKKSNRRFVKQIMYASRKA 289


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,473,053
Number of Sequences: 37544
Number of extensions: 292329
Number of successful extensions: 780
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)