Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0169
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0254 + 11089236-11089290,11089366-11089415,11089530-110895...    29   4.9  
10_08_0186 - 15582925-15584334                                         28   8.6  

>05_03_0254 +
           11089236-11089290,11089366-11089415,11089530-11089562,
           11090601-11091674,11092245-11092728,11092857-11092882,
           11092883-11092993,11093082-11093171,11093251-11093322,
           11094043-11094153,11095086-11095143,11095605-11095804,
           11096666-11096818,11097134-11097334
          Length = 905

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -3

Query: 621 LDLIPGQTLLTMCPVAIIKQKKSSNNLKQRDLPDQLPRVLCG 496
           +DL P Q  +T C V + ++KK     K RDL   L R++ G
Sbjct: 208 IDLKPLQDAITNCNVLLTERKKV--EFKSRDLVQDLGRIIRG 247


>10_08_0186 - 15582925-15584334
          Length = 469

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +1

Query: 187 PKKMSASSATRCSRQHRPGAQLLEHHR*QEQFQHRT 294
           P   S ++A      HR  A    HHR + +F H T
Sbjct: 9   PHPASTTAAAAARHHHRRNAPFAPHHRRRRRFAHLT 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,913,650
Number of Sequences: 37544
Number of extensions: 301488
Number of successful extensions: 546
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)