Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0120
         (557 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0272 + 2105579-2105671,2105779-2105882,2106006-2107014,210...    29   3.3  
12_01_1105 + 11672118-11673245                                         28   5.8  
04_01_0067 - 673381-673387,675388-678131                               28   5.8  

>03_01_0272 +
           2105579-2105671,2105779-2105882,2106006-2107014,
           2107130-2107153
          Length = 409

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 287 RKNPGYSPEGRARRDDYLDPKK 222
           +++P +SP GRAR    L PKK
Sbjct: 19  KRSPAHSPSGRARATPRLSPKK 40


>12_01_1105 + 11672118-11673245
          Length = 375

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -3

Query: 396 CQDASIGVPHACPGVLGVDLGSTWFSEIPDY--TGCFP 289
           C+D   G+P++CP    +D+ +T+ +    +  T  FP
Sbjct: 326 CEDHDDGIPYSCPTTNTMDIATTYNAGFSQFAPTSLFP 363


>04_01_0067 - 673381-673387,675388-678131
          Length = 916

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 350 WESISVARGFQKFRITLAVFHRKNPGY 270
           W S+S + GF K  IT  +    NP Y
Sbjct: 244 WASVSTSGGFHKIDITEQILRSANPTY 270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,542,852
Number of Sequences: 37544
Number of extensions: 329223
Number of successful extensions: 689
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)