Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120088.Seq
         (724 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0077 + 16284106-16284128,16284552-16284795,16285490-162855...    33   0.30 
08_02_1330 + 26191062-26191314,26191894-26191961,26192125-261923...    32   0.40 
02_05_0201 + 26687369-26689228                                         31   1.2  
05_05_0057 + 21995018-21997006                                         29   3.7  
06_03_0756 + 24244313-24244999                                         29   4.9  
01_05_0535 - 23001864-23005052                                         28   8.6  

>06_03_0077 +
           16284106-16284128,16284552-16284795,16285490-16285591,
           16286347-16287057
          Length = 359

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = -3

Query: 524 TTCQTSLPHQTDAIQCSQTKLPR---DQRAHARRCSKRTAAKPPFT*SHENLESSRSGHT 354
           +T  T LP    A   S+TK PR   D  A A R  + TA + PF  +H  +E   +G  
Sbjct: 30  STIVTPLPVLPLAPSASRTKSPRLVLDHLAKAYRVLETTAQEAPFELNHLYVEMGSAGDK 89

Query: 353 LGRRRLS 333
            GRRR S
Sbjct: 90  -GRRRRS 95


>08_02_1330 +
           26191062-26191314,26191894-26191961,26192125-26192355,
           26192736-26192837,26192893-26192955,26193910-26193984
          Length = 263

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
 Frame = -2

Query: 618 ITRNNDVPNIRNVFQGISDPQINSLRQLRRMDNVPDFITTP---NRRDPMQ 475
           + R + VP++R    G+  PQ+NS  Q+ +  +VP+  T+     +R+P+Q
Sbjct: 108 VMRKSSVPDLREKLSGVQRPQLNSTVQIPK--SVPEISTSAKPVQKREPVQ 156


>02_05_0201 + 26687369-26689228
          Length = 619

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 339 PPPAKSMPTPATFKVLM*LCKRGFCC 416
           PPP +  P P T++    +CK+GF C
Sbjct: 23  PPPPQPPPPPLTYRHHCKVCKKGFMC 48


>05_05_0057 + 21995018-21997006
          Length = 662

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
 Frame = -3

Query: 458 RDQRAHARRCSKRTAAKPPFT*SHENLESSR------SGHTLGRRRLSFVYRRHISTRYN 297
           R   A  +RC+   +A+  F+ +   L SSR      +G+ + RRR      R+ S RY+
Sbjct: 555 RGCNARMQRCNSNASARSSFSSNSGGLGSSRRSYVDGNGNVVKRRREECALERNRSARYS 614

Query: 296 QRHQ*N 279
             H  N
Sbjct: 615 PGHADN 620


>06_03_0756 + 24244313-24244999
          Length = 228

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = -2

Query: 576 QGISDPQINSLRQLRRMDNVPDFITTPNRRDPMQSDKTSQRPTCARPKVFKTHCSKT 406
           +G S P +  L    R++    ++  P+   P  S  T    TCA   VF   CS T
Sbjct: 50  EGESSPTVAFLAATWRLETCAGWLQEPSSPTPRTSLPTRLALTCAATLVFPMCCSPT 106


>01_05_0535 - 23001864-23005052
          Length = 1062

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 270 LPPVLLMALIISCTNVAAVNKR*PPPAKSMPTPATFKVLM 389
           LPP+ L     S ++ AA     PPP + +P P   + L+
Sbjct: 8   LPPLTLRRSSSSSSSAAAAASPPPPPPRRLPPPVPLRDLL 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,178,449
Number of Sequences: 37544
Number of extensions: 486867
Number of successful extensions: 1296
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1293
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)